Difference between revisions of "RapJ"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of the [[phosphorelay]]
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of the [[phosphorelay]]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU02820 rapJ]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02820 rapJ]
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapJ RapJ]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapJ RapJ]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cwlK]]'', ''[[ycdF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cwlK]]'', ''[[ycdF]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12076&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02820 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rapJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rapJ_context.gif]]

Revision as of 12:04, 13 May 2013

Gene name rapJ
Synonyms ycdE
Essential no
Product response regulator aspartate phosphatase
Function control of the phosphorelay
Gene expression levels in SubtiExpress: rapJ
Interactions involving this protein in SubtInteract: RapJ
MW, pI 44 kDa, 4.902
Gene length, protein length 1119 bp, 373 aa
Immediate neighbours cwlK, ycdF
Sequences Protein DNA Advanced_DNA
Genetic context
RapJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RapJ expression.png















Categories containing this gene/protein

protein modification, phosphorelay, transcription factors and their control

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU02820

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: RAP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
    • RapJ is made up of the C-terminal tetratricopeptide repeat (TPR) domain that is connected by a flexible helix containing linker to the N-terminal 3-helix bundle. Upon binding of the regulating peptide PhrC, the 3-helix bundle and the linker helix undergo a conformational change to form a TPR-like fold that merges with the existing C-terminal TPR domain. PubMed
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: rapJ (according to DBTBS)
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Vijay Parashar, Philip D Jeffrey, Matthew B Neiditch
Conformational change-induced repeat domain expansion regulates Rap phosphatase quorum-sensing signal receptors.
PLoS Biol: 2013, 11(3);e1001512
[PubMed:23526881] [WorldCat.org] [DOI] (I p)

Vijay Parashar, Nicolas Mirouze, David A Dubnau, Matthew B Neiditch
Structural basis of response regulator dephosphorylation by Rap phosphatases.
PLoS Biol: 2011, 9(2);e1000589
[PubMed:21346797] [WorldCat.org] [DOI] (I e)