Difference between revisions of "RadC"

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* '''Operon:''' ''radC'' (according to [http://dbtbs.hgc.jp/COG/prom/radC.html DBTBS]), ''[[radC]]-[[mreB]]-[[mreC]]-[[mreD]]-[[minC]]-[[minD]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/18179421 PubMed]
 
* '''Operon:''' ''radC'' (according to [http://dbtbs.hgc.jp/COG/prom/radC.html DBTBS]), ''[[radC]]-[[mreB]]-[[mreC]]-[[mreD]]-[[minC]]-[[minD]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/18179421 PubMed]
  
* '''[[Sigma factor]]:''' [[SigM]] {{PubMed|12775685}}  
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=radC_2861840_2862535_-1 radC] {{PubMed|22383849}}
 +
 
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* '''Sigma factor:''' [[SigM]] {{PubMed|12775685}}  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 14:25, 16 April 2012

  • Description: probable DNA repair protein

Gene name radC
Synonyms ysxA
Essential no
Product probable DNA repair protein
Function DNA repair
MW, pI 25 kDa, 7.829
Gene length, protein length 693 bp, 231 aa
Immediate neighbours mreB, maf
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RadC context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

DNA repair/ recombination, genetic competence, cell envelope stress proteins (controlled by SigM, V, W, X, Y)

This gene is a member of the following regulons

ComK regulon, SigM regulon

The gene

Basic information

  • Locus tag: BSU28040

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: radC family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress (SigM) PubMed
    • expression is reduced in a SigV mutant PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed