Difference between revisions of "RNase Y targets"

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(Important publications on RNase Y targets)
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=== RNAs directly cleaved by [[rny|RNase Y]] ===
 
=== RNAs directly cleaved by [[rny|RNase Y]] ===
  
** the [[S-box]] [[riboswitch]] RNAs ''in vivo'' and ''in vitro'' {{PubMed|19779461}}
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* the [[S-box]] [[riboswitch]] RNAs ''in vivo'' and ''in vitro'' {{PubMed|19779461}}
** processing of the ''[[gapA]]'' operon mRNA {{PubMed|19193632}}  
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* processing of the ''[[gapA]]'' operon mRNA {{PubMed|19193632}}  
** initiates the degradation of ''[[rpsO]]'' mRNA {{PubMed|20418391}}
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* initiates the degradation of ''[[rpsO]]'' mRNA {{PubMed|20418391}}
  
 
=== Increased RNA amount upon [[rny|RNase Y]] depletion ===
 
=== Increased RNA amount upon [[rny|RNase Y]] depletion ===
  
=== Increased RNA amount upon [[rny|RNase Y]] depletion ===
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* ''[[trpE]]-[[trpD]]-[[trpC]]-[[trpF]]-[[trpB]]-[[trpA]]-[[hisC]]-[[tyrA]]-[[aroE]]'' {{PubMed|21815947}}
 +
* ''[[yhbI]]-[[yhbJ]]-[[yhcA]]-[[yhcB]]-[[yhcC]]-[[yhcD]]-[[yhcE]]-[[yhcF]]-[[yhcG]]-[[yhcH]]-[[yhcI]]'' {{PubMed|21815947}}
 +
* ''[[ysbA]]-[[ysbB]]'' {{PubMed|21815947}}
 +
* ''[[yrhG]]'' {{PubMed|21815947}}
 +
* ''[[maeA]]-[[ywkB]]'' {{PubMed|21815947}}
 +
* ''[[nhaC]]'' {{PubMed|21815947}}
 +
* ''[[guaC]]'' {{PubMed|21815947}}
 +
* ''[[ydaB]]'' {{PubMed|21815947}}
 +
* ''[[maeN]]'' {{PubMed|21815947}}
 +
* ''[[cimH]]'' {{PubMed|21815947}}
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* ''[[ynfC]]'' {{PubMed|21815947}}
 +
* ''[[yrhE]]-[[yrhD]]'' {{PubMed|21815947}}
 +
* ''[[yjbC]]-[[spx]]'' {{PubMed|21815947}}
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* ''[[yrhF]]'' {{PubMed|21815947}}
 +
* ''[[speD]]'' {{PubMed|21815947}}
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* ''[[yhfH]]'' {{PubMed|21815947}}
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* ''[[pabA]]-[[pabC]]'' {{PubMed|21815947}}
 +
 
 +
=== Decreased RNA amount upon [[rny|RNase Y]] depletion ===
  
  

Revision as of 17:26, 10 August 2011

Regulator

RNase Y

RNAs that are targeted by RNase Y

RNAs directly cleaved by RNase Y

Increased RNA amount upon RNase Y depletion

Decreased RNA amount upon RNase Y depletion

Important publications on RNase Y targets

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J.  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 Aug 4. doi: 10.1111/j.1365-2958.2011.07777.x. [Epub ahead of print] 
PubMed:21815947

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