Difference between revisions of "RNase Y targets"

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(→‎RNAs that are targeted by RNase Y)
(→‎RNAs directly cleaved by RNase Y)
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* the [[S-box]] [[riboswitch]] RNAs ''in vivo'' and ''in vitro'' {{PubMed|19779461}}
 
* the [[S-box]] [[riboswitch]] RNAs ''in vivo'' and ''in vitro'' {{PubMed|19779461}}
−
* processing of the ''[[gapA]]'' operon mRNA {{PubMed|19193632}}  
+
* processing of the ''[[gapA]]'' operon mRNA between ''[[cggR]]'' and ''[[gapA]]'' (''[[cggR]]-[[gapA]]-[[pgk]]-[[tpi]]-[[pgm]]-[[eno]]'') {{PubMed|29794222,19193632}}
 +
* processing of the ATPase operon mRNA between ''[[atpI]]'' and ''[[atpB]]'' (''[[atpI]]-[[atpB]]-[[atpE]]-[[atpF]]-[[atpH]]-[[atpA]]-[[atpG]]-[[atpD]]-[[atpC]]'') {{PubMed|29794222}}
 +
* processing of the ''[[dacA]]-[[pdxS]]-[[pdxT]]-[[serS]]'' mRNA upstream of ''[[dacA]]'' {{PubMed|29794222}}
 +
* processing of the ''[[ddl]]-[[murF]]'' mRNA upstream of ''[[ddl]]'' {{PubMed|29794222}}
 +
* processing of the ''[[yfjN]]'' leader mRNA {{PubMed|29794222}}
 +
* processing of the ''[[glnR]]-[[glnA]]'' operon mRNA between ''[[glnR]]'' and ''[[glnA]]'' {{PubMed|29794222}}
 +
* processing of the ''[[hbs]]'' leader mRNA {{PubMed|29794222}}
 +
* processing of the ''[[menA]]'' leader mRNA {{PubMed|29794222}}
 +
* processing of the ''[[metN]]-[[metP]]-[[metQ]]'' operon mRNA between ''[[metP]]'' and ''[[metQ]]'' {{PubMed|29794222}}
 +
* processing of the ''[[moaC]]-[[rex]]-[[tatAY]]-[[tatCY]]'' operon mRNA between ''[[rex]]'' and ''[[tatAY]]'' {{PubMed|29794222}}
 +
* processing of the ''[[rplGB]]-[[rpsL]]-[[rpsG]]-[[fusA]]-[[tufA]]'' operon mRNA between ''[[rplGB]]'' and ''[[rpsL]]'' {{PubMed|29794222}}
 +
* processing of the ''[[rpoB]]-[[rpoC]]'' leader mRNA {{PubMed|29794222}}
 +
* processing of the ''[[rpoE]]-[[pyrG]]'' operon mRNA between ''[[rpoE]]'' and ''[[pyrG]]'' {{PubMed|29794222}}
 +
* processing of the ''[[ruvA]]-[[ruvB]]-[[yrzS]]-[[queA]]-[[tgt]]-[[yrbF]]'' operon mRNA between ''[[tgt]]'' and ''[[yrbF]]'' {{PubMed|29794222}}
 +
* processing of the ''[[tagA]]-[[tagB]]'' mRNA upstream of ''[[tagA]]'' {{PubMed|29794222}}
 +
* processing of the ''[[ybfG]]-[[ybfF]]-[[ybfE]]'' operon mRNA between ''[[ybfG]]'' and ''[[ybfF]]'' {{PubMed|29794222}}
 +
* processing of the ''[[ylxM]]-[[ffh]]-[[rpsP]]-[[ylqC]]-[[ylqD]]-[[rimM]]-[[trmD]]-[[rplS]]'' operon mRNA between ''[[ffh]]'' and ''[[rpsP]]'' {{PubMed|29794222}}
 +
* processing of the ''[[yonR]]-[[yonS]]'' operon mRNA between ''[[yonR]]'' and ''[[yonS]]'' {{PubMed|29794222}}
 +
* processing of the ''[[yqhL]]'' leader mRNA {{PubMed|29794222}}
 +
* processing of the ''[[ywzH]]-[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]]'' operon mRNA between ''[[ywzH]]'' and ''[[dltA]]'' {{PubMed|29794222}}
 
* initiates the degradation of ''[[rpsO]]'' mRNA {{PubMed|20418391}}
 
* initiates the degradation of ''[[rpsO]]'' mRNA {{PubMed|20418391}}
 
* ''[[infC]]-[[rpmI]]-[[rplT]]'' mRNA {{PubMed|21843271}}
 
* ''[[infC]]-[[rpmI]]-[[rplT]]'' mRNA {{PubMed|21843271}}
−
* leader of the ''[[cwlO]]'' mRNA {{PubMed|24163346}}
+
* leader of the ''[[cwlO]]'' mRNA {{PubMed|29794222,24163346}}
 
* the [[RoxS]] [[sRNA]] {{PubMed|25643072}}
 
* the [[RoxS]] [[sRNA]] {{PubMed|25643072}}
 
* the ''[[ppnKB]]'' mRNA {{PubMed|25643072}}
 
* the ''[[ppnKB]]'' mRNA {{PubMed|25643072}}

Revision as of 12:39, 30 May 2018

Regulator

RNase Y

RNAs that are targeted by RNase Y

  • The targets listed below are affected >2.5 fold upon RNase Y depletion PubMed

RNAs directly cleaved by RNase Y

Increased RNA amount upon RNase Y depletion

Decreased RNA amount upon RNase Y depletion

Important publications on RNase Y targets

Soumaya Laalami, Philippe Bessières, Anna Rocca, Léna Zig, Pierre Nicolas, Harald Putzer
Bacillus subtilis RNase Y activity in vivo analysed by tiling microarrays.
PLoS One: 2013, 8(1);e54062
[PubMed:23326572] [WorldCat.org] [DOI] (I p)

Sylvain Durand, Laetitia Gilet, Philippe Bessières, Pierre Nicolas, Ciarán Condon
Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs.
PLoS Genet: 2012, 8(3);e1002520
[PubMed:22412379] [WorldCat.org] [DOI] (I p)

Martin Lehnik-Habrink, Marc Schaffer, Ulrike Mäder, Christine Diethmaier, Christina Herzberg, Jörg Stülke
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y.
Mol Microbiol: 2011, 81(6);1459-73
[PubMed:21815947] [WorldCat.org] [DOI] (I p)


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