Difference between revisions of "RNase Y targets"
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* ''[[yflS]]'' {{PubMed|21815947}} | * ''[[yflS]]'' {{PubMed|21815947}} | ||
* several [[SP-beta prophage]] genes, exemplified by ''[[yorW]]'' {{PubMed|21815947}} | * several [[SP-beta prophage]] genes, exemplified by ''[[yorW]]'' {{PubMed|21815947}} | ||
| + | * ''[[sinR]]'' {{PubMed|21815947}} | ||
| + | * ''[[sinI]]-[[sinR]]'' {{PubMed|21815947}} | ||
=== Decreased RNA amount upon [[rny|RNase Y]] depletion === | === Decreased RNA amount upon [[rny|RNase Y]] depletion === | ||
| + | |||
| + | * ''[[slrR]]'' {{PubMed|21815947}} (this is likely due to the increased stability of the ''[[sinR]]'' mRNA upon [[rny|RNase Y]] depletion {{PubMed|21815947}}) | ||
| + | * ''[[epsA]]-[[epsB]]-[[epsC]]-[[epsD]]-[[epsE]]-[[epsF]]-[[epsG]]-[[epsH]]-[[epsI]]-[[epsJ]]-[[epsK]]-[[epsL]]-[[epsM]]-[[epsN]]-[[epsO]]'' {{PubMed|21815947}} (this is likely due to the increased stability of the ''[[sinR]]'' mRNA upon [[rny|RNase Y]] depletion {{PubMed|21815947}}) | ||
| + | * ''[[ctaO]]'' {{PubMed|21815947}} | ||
| + | * ''[[lip]]'' {{PubMed|21815947}} | ||
| + | * ''[[sunT]]-[[bdbA]]-[[yolJ]]'' {{PubMed|21815947}} | ||
| + | * ''[[yydF]]-[[yydG]]-[[yydH]]-[[yydI]]-[[yydJ]]'' {{PubMed|21815947}} | ||
| + | * ''[[tapA]]-[[sipW]]-[[tasA]]'' {{PubMed|21815947}} (this is likely due to the increased stability of the ''[[sinR]]'' mRNA upon [[rny|RNase Y]] depletion {{PubMed|21815947}}) | ||
| + | * ''[[dhbA]]-[[dhbC]]-[[dhbE]]-[[dhbB]]-[[dhbF]]'' {{PubMed|21815947}} | ||
| + | * ''[[thrZ]]'' {{PubMed|21815947}} | ||
| + | * ''[[yfmG]]'' {{PubMed|21815947}} | ||
| + | * ''[[sdpA]]-[[sdpB]]-[[sdpC]]'' {{PubMed|21815947}} | ||
| + | * ''[[wprA]]'' {{PubMed|21815947}} | ||
| + | * ''[[yxeK]]-[[yxeL]]-[[yxeM]]'' {{PubMed|21815947}} | ||
| + | * ''[[yxbB]]'' {{PubMed|21815947}} | ||
= Important publications on [[rny|RNase Y]] targets = | = Important publications on [[rny|RNase Y]] targets = | ||
Revision as of 18:58, 10 August 2011
| Regulator | |
Contents
RNAs that are targeted by RNase Y
RNAs directly cleaved by RNase Y
- the S-box riboswitch RNAs in vivo and in vitro PubMed
- processing of the gapA operon mRNA PubMed
- initiates the degradation of rpsO mRNA PubMed
Increased RNA amount upon RNase Y depletion
- trpE-trpD-trpC-trpF-trpB-trpA-hisC-tyrA-aroE PubMed
- yhbI-yhbJ-yhcA-yhcB-yhcC-yhcD-yhcE-yhcF-yhcG-yhcH-yhcI PubMed
- ysbA-ysbB PubMed
- yrhG PubMed
- maeA-ywkB PubMed
- nhaC PubMed
- guaC PubMed
- ydaB PubMed
- maeN PubMed
- cimH PubMed
- ynfC PubMed
- yrhE-yrhD PubMed
- yjbC-spx PubMed
- yrhF PubMed
- speD PubMed
- yhfH PubMed
- pabA-pabC PubMed
- yebC PubMed
- yurR-yurQ-frlB-frlO-frlN-frlM-frlD PubMed
- yuxJ PubMed
- lmrA-lmrB PubMed
- yrhH PubMed
- acoA-acoB-acoC-acoL PubMed
- ribU PubMed
- pbpA PubMed
- ytdI PubMed
- cggR-gapA PubMed
- yhdY PubMed
- ywcI PubMed
- yflS PubMed
- several SP-beta prophage genes, exemplified by yorW PubMed
- sinR PubMed
- sinI-sinR PubMed
Decreased RNA amount upon RNase Y depletion
- slrR PubMed (this is likely due to the increased stability of the sinR mRNA upon RNase Y depletion PubMed)
- epsA-epsB-epsC-epsD-epsE-epsF-epsG-epsH-epsI-epsJ-epsK-epsL-epsM-epsN-epsO PubMed (this is likely due to the increased stability of the sinR mRNA upon RNase Y depletion PubMed)
- ctaO PubMed
- lip PubMed
- sunT-bdbA-yolJ PubMed
- yydF-yydG-yydH-yydI-yydJ PubMed
- tapA-sipW-tasA PubMed (this is likely due to the increased stability of the sinR mRNA upon RNase Y depletion PubMed)
- dhbA-dhbC-dhbE-dhbB-dhbF PubMed
- thrZ PubMed
- yfmG PubMed
- sdpA-sdpB-sdpC PubMed
- wprA PubMed
- yxeK-yxeL-yxeM PubMed
- yxbB PubMed
Important publications on RNase Y targets
Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J. RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. Mol Microbiol. 2011 Aug 4. doi: 10.1111/j.1365-2958.2011.07777.x. [Epub ahead of print] PubMed:21815947
