Difference between revisions of "RNase Y targets"
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=== RNAs directly cleaved by [[rny|RNase Y]] === | === RNAs directly cleaved by [[rny|RNase Y]] === | ||
| − | + | * the [[S-box]] [[riboswitch]] RNAs ''in vivo'' and ''in vitro'' {{PubMed|19779461}} | |
| − | + | * processing of the ''[[gapA]]'' operon mRNA {{PubMed|19193632}} | |
| − | + | * initiates the degradation of ''[[rpsO]]'' mRNA {{PubMed|20418391}} | |
=== Increased RNA amount upon [[rny|RNase Y]] depletion === | === Increased RNA amount upon [[rny|RNase Y]] depletion === | ||
| − | === | + | * ''[[trpE]]-[[trpD]]-[[trpC]]-[[trpF]]-[[trpB]]-[[trpA]]-[[hisC]]-[[tyrA]]-[[aroE]]'' {{PubMed|21815947}} |
| + | * ''[[yhbI]]-[[yhbJ]]-[[yhcA]]-[[yhcB]]-[[yhcC]]-[[yhcD]]-[[yhcE]]-[[yhcF]]-[[yhcG]]-[[yhcH]]-[[yhcI]]'' {{PubMed|21815947}} | ||
| + | * ''[[ysbA]]-[[ysbB]]'' {{PubMed|21815947}} | ||
| + | * ''[[yrhG]]'' {{PubMed|21815947}} | ||
| + | * ''[[maeA]]-[[ywkB]]'' {{PubMed|21815947}} | ||
| + | * ''[[nhaC]]'' {{PubMed|21815947}} | ||
| + | * ''[[guaC]]'' {{PubMed|21815947}} | ||
| + | * ''[[ydaB]]'' {{PubMed|21815947}} | ||
| + | * ''[[maeN]]'' {{PubMed|21815947}} | ||
| + | * ''[[cimH]]'' {{PubMed|21815947}} | ||
| + | * ''[[ynfC]]'' {{PubMed|21815947}} | ||
| + | * ''[[yrhE]]-[[yrhD]]'' {{PubMed|21815947}} | ||
| + | * ''[[yjbC]]-[[spx]]'' {{PubMed|21815947}} | ||
| + | * ''[[yrhF]]'' {{PubMed|21815947}} | ||
| + | * ''[[speD]]'' {{PubMed|21815947}} | ||
| + | * ''[[yhfH]]'' {{PubMed|21815947}} | ||
| + | * ''[[pabA]]-[[pabC]]'' {{PubMed|21815947}} | ||
| + | |||
| + | === Decreased RNA amount upon [[rny|RNase Y]] depletion === | ||
Revision as of 18:26, 10 August 2011
| Regulator | |
Contents
RNAs that are targeted by RNase Y
RNAs directly cleaved by RNase Y
- the S-box riboswitch RNAs in vivo and in vitro PubMed
- processing of the gapA operon mRNA PubMed
- initiates the degradation of rpsO mRNA PubMed
Increased RNA amount upon RNase Y depletion
- trpE-trpD-trpC-trpF-trpB-trpA-hisC-tyrA-aroE PubMed
- yhbI-yhbJ-yhcA-yhcB-yhcC-yhcD-yhcE-yhcF-yhcG-yhcH-yhcI PubMed
- ysbA-ysbB PubMed
- yrhG PubMed
- maeA-ywkB PubMed
- nhaC PubMed
- guaC PubMed
- ydaB PubMed
- maeN PubMed
- cimH PubMed
- ynfC PubMed
- yrhE-yrhD PubMed
- yjbC-spx PubMed
- yrhF PubMed
- speD PubMed
- yhfH PubMed
- pabA-pabC PubMed
Decreased RNA amount upon RNase Y depletion
Important publications on RNase Y targets
Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J. RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. Mol Microbiol. 2011 Aug 4. doi: 10.1111/j.1365-2958.2011.07777.x. [Epub ahead of print] PubMed:21815947
