Difference between revisions of "PyrF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pyrD]]'', ''[[pyrE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pyrD]]'', ''[[pyrE]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15550 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15550 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15550 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15550 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15550 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15550 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:pyrF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:pyrF_context.gif]]

Revision as of 10:11, 14 May 2013

  • Description: orotidine 5'-phosphate decarboxylase

Gene name pyrF
Synonyms
Essential no
Product orotidine-5'-phosphate decarboxylase
Function pyrimidine biosynthesis
Gene expression levels in SubtiExpress: pyrF
Metabolic function and regulation of this protein in SubtiPathways:
Pyrimidines, Nucleotides (regulation)
MW, pI 25 kDa, 5.835
Gene length, protein length 717 bp, 239 aa
Immediate neighbours pyrD, pyrE
Sequences Protein DNA DNA_with_flanks
Genetic context
PyrF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PyrF expression.png




























Categories containing this gene/protein

biosynthesis/ acquisition of nucleotides

This gene is a member of the following regulons

PyrR regulon

The gene

Basic information

  • Locus tag: BSU15550

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Orotidine 5'-phosphate = UMP + CO2 (according to Swiss-Prot)
  • Protein family: Type 1 subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
    • induced in the absence of uridine nucleotides (PyrR) PubMed
  • Regulatory mechanism:
    • PyrR: RNA switch, transcription termination/ antitermination (in the presence of uridine nucleotides: termination, in their absence: antitermination) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

R J Turner, Y Lu, R L Switzer
Regulation of the Bacillus subtilis pyrimidine biosynthetic (pyr) gene cluster by an autogenous transcriptional attenuation mechanism.
J Bacteriol: 1994, 176(12);3708-22
[PubMed:8206849] [WorldCat.org] [DOI] (P p)

C L Quinn, B T Stephenson, R L Switzer
Functional organization and nucleotide sequence of the Bacillus subtilis pyrimidine biosynthetic operon.
J Biol Chem: 1991, 266(14);9113-27
[PubMed:1709162] [WorldCat.org] (P p)