Difference between revisions of "PolA"

From SubtiWiki
Jump to: navigation, search
Line 35: Line 35:
 
=== Basic information ===
 
=== Basic information ===
  
* '''Locus tag:'''
+
* '''Locus tag:''' BSU29090
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
Line 80: Line 80:
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34996 O34996]
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34996 O34996]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU29090 BSU29090]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU29090]
  
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/2.7.7.7 2.7.7.7]
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/2.7.7.7 2.7.7.7]

Revision as of 14:06, 3 June 2009

  • Description: DNA polymerase I

Gene name polA
Synonyms
Essential no
Product DNA polymerase I
Function DNA replication
MW, pI 98 kDa, 4.916
Gene length, protein length 2640 bp, 880 aa
Immediate neighbours mutM, phoR
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
PolA context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU29090

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1) (according to Swiss-Prot)
  • Protein family: DNA polymerase type-A family (according to Swiss-Prot)
  • Paralogous protein(s): YpcP, one of the two proteins has to be present for viability PubMed

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 1XWL (large fragment, corresponds to AA 310 to 880, Geobacillus stearothermophilus)
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Thomaides, H. B., Davison, E. J., Burston, L., Johnson, H., Brown, D. R., Hunt, A. C., Errington, J., and Czaplewski, L. (2007) Essential bacterial functions encoded by gene pairs. J Bacteriol 189, 591-602. PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed