Difference between revisions of "PnpA"

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(Basic information/ Evolution)
(References)
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<pubmed>11948165,,8825779,19433509, 19327365, 9811656, 14976255,19433509, 15995184, 8825778, 8636041, 15805522, 19193632, 1707536  19633085 19638340  </pubmed>
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<pubmed>11948165,,8825779,19433509, 19327365, 9811656, 14976255,19433509, 15995184, 8825778, 8636041, 15805522, 19193632, 1707536  19633085 19638340 20360175 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 10:59, 3 April 2010

  • Description: polynucleotide phosphorylase, RNase

Gene name pnpA
Synonyms comR
Essential no
Product polynucleotide phosphorylase (PNPase) (EC 2.7.7.8)
Function necessary for competence development
MW, pI 77 kDa, 4.89
Gene length, protein length 2115 bp, 705 aa
Immediate neighbours rpsO, ylxY
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
PnpA context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU16690

Phenotypes of a mutant

  • The pnpA mutant is cold sensitive and sensitive to tetracyclin, it shows multiseptate filamentous growth.
  • The mutant is deficient in genetic competence (no expression of the late competence genes)
  • The mutant overexpresses the trp and ycgM-ycgN-ycgO operons.

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 3'-5' exoribonuclease, RNase, PNPase degrades the trp mRNA from the RNA-TRAP complex
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:

Database entries

  • Structure: 3CDI (protein from E. coli), 3GCM (protein from E. coli, PNPase/RNase E micro-domain/RNA tetragonal crystal form )
  • KEGG entry: [2]
  • E.C. number:

Additional information

required for the expression of late competence genes comGA and comK, requirement bypassed by a mecA disruption; may be necessary for modification of the srfAA transcript (stabilization or translation activation)

Expression and regulation

  • Operon:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant: GP584 (spc), available in Stülke lab
  • Expression vector:
    • for expression, purification in E. coli with N-terminal His-tag, in pWH844: pGP838, available in Stülke lab
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
  • Antibody:

Labs working on this gene/protein

David Bechhofer, Mount Sinai School, New York, USA Homepage

Your additional remarks

References