Difference between revisions of "PhoD"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yczK]]'', ''[[tatAD]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yczK]]'', ''[[tatAD]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02620 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02620 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:phoD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:phoD_context.gif]]

Revision as of 09:24, 14 May 2013

  • Description: phosphodiesterase/alkaline phosphatase

Gene name phoD
Synonyms ycbS
Essential no
Product phosphodiesterase/alkaline phosphatase
Function aquisition of phosphate upon phosphoate starvation
Gene expression levels in SubtiExpress: phoD
Interactions involving this protein in SubtInteract: PhoD
Metabolic function and regulation of this protein in SubtiPathways:
Protein secretion
MW, pI 62 kDa, 8.394
Gene length, protein length 1668 bp, 556 aa
Immediate neighbours yczK, tatAD
Sequences Protein DNA DNA_with_flanks
Genetic context
PhoD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PhoD expression.png















Categories containing this gene/protein

phosphate metabolism

This gene is a member of the following regulons

PhoP regulon

The gene

Basic information

  • Locus tag: BSU02620

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: A phosphate monoester + H2O = an alcohol + phosphate (according to Swiss-Prot)
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
    • expressed under conditions of phosphate limitation (PhoP) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Oscar Kuipers, University of Groningen, The Netherlands Homepage

Your additional remarks

References

Additional publications: PubMed