Difference between revisions of "PhoD"
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[phoD]]'' {{PubMed| | + | * '''Operon:''' ''[[phoD]]-[[tatAD]]-[[tatCD]]'' {{PubMed|22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=phoD_284011_285762_1 phoD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=phoD_284011_285762_1 phoD] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigA]] {{PubMed|10094677}} | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|10094677}} |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
Additional publications: {{PubMed|22960285}} | Additional publications: {{PubMed|22960285}} | ||
| − | <pubmed>8760916,10913081,12867413,10094677,12218047,10556724,19180538,10094677, 18957862, 19383693, 19395490 </pubmed> | + | <pubmed>8760916,10913081,12867413,10094677,12218047,10556724,19180538,10094677, 18957862, 19383693, 19395490 22383849</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 13:18, 28 November 2012
- Description: phosphodiesterase/alkaline phosphatase
| Gene name | phoD |
| Synonyms | ycbS |
| Essential | no |
| Product | phosphodiesterase/alkaline phosphatase |
| Function | aquisition of phosphate upon phosphoate starvation |
| Gene expression levels in SubtiExpress: phoD | |
| Interactions involving this protein in SubtInteract: PhoD | |
| Metabolic function and regulation of this protein in SubtiPathways: Protein secretion | |
| MW, pI | 62 kDa, 8.394 |
| Gene length, protein length | 1668 bp, 556 aa |
| Immediate neighbours | ycbR, tatAD |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU02620
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: A phosphate monoester + H2O = an alcohol + phosphate (according to Swiss-Prot)
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: extracellular (signal peptide) PubMed, secreted by the TatAD-TatCD complex PubMed
Database entries
- Structure: 2YEQ
- UniProt: P42251
- KEGG entry: [3]
- E.C. number: 3.1.3.1
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Oscar Kuipers, University of Groningen, The Netherlands Homepage
Your additional remarks
References
Additional publications: PubMed
