Difference between revisions of "PelC"

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= Categories containing this gene/protein =
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{{SubtiWiki category|[[utilization of specific carbon sources]]}}
 
=The protein=
 
=The protein=
  

Revision as of 18:43, 30 November 2010

  • Description: pectate lyase C

Gene name pelC
Synonyms yvpA
Essential no
Product pectate lyase C
Function degradation of polygalacturonic acid
MW, pI 24 kDa, 9.14
Gene length, protein length 663 bp, 221 aa
Immediate neighbours yvpB, yvoF
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YvpA context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU34950

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

Categories containing this gene/protein

utilization of specific carbon sources

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends (according to Swiss-Prot)
  • Protein family: polysaccharide lyase 3 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: secreted (according to Swiss-Prot), extracellular (signal peptide) PubMed

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • The mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References