Difference between revisions of "PelB"

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|style="background:#ABCDEF;" align="center"|'''Function''' || degradation of polygalacturonic acid  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || degradation of polygalacturonic acid  
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU18650 pelB]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18650 pelB]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 37 kDa, 9.436   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 37 kDa, 9.436   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yoaK]]'', ''[[yoaM]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yoaK]]'', ''[[yoaM]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13757&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18650 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:pelB_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:pelB_context.gif]]

Revision as of 12:59, 13 May 2013

  • Description: pectate lyase

Gene name pelB
Synonyms ppr
Essential no
Product pectate lyase
Function degradation of polygalacturonic acid
Gene expression levels in SubtiExpress: pelB
MW, pI 37 kDa, 9.436
Gene length, protein length 1035 bp, 345 aa
Immediate neighbours yoaK, yoaM
Sequences Protein DNA Advanced_DNA
Genetic context
PelB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PelB expression.png
























Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU18650

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Eliminative cleavage of (1->4)-alpha-D-galacturonan methyl ester to give oligosaccharides with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronosyl groups at their non-reducing ends (according to Swiss-Prot)
  • Protein family: UPF0700 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862] [WorldCat.org] [DOI] (I p)