Difference between revisions of "Pel"
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|style="background:#ABCDEF;" align="center"|'''Function''' || degradation of polygalacturonic acid | |style="background:#ABCDEF;" align="center"|'''Function''' || degradation of polygalacturonic acid | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07560 pel] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 45 kDa, 8.421 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 45 kDa, 8.421 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yflT]]'', ''[[yflS]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yflT]]'', ''[[yflS]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07560 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07560 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07560 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:pel_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:pel_context.gif]] | ||
Revision as of 12:21, 13 May 2013
- Description: pectate lyase C
| Gene name | pel |
| Synonyms | |
| Essential | no |
| Product | pectate lyase C |
| Function | degradation of polygalacturonic acid |
| Gene expression levels in SubtiExpress: pel | |
| MW, pI | 45 kDa, 8.421 |
| Gene length, protein length | 1260 bp, 420 aa |
| Immediate neighbours | yflT, yflS |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
CcpA regulon, ComA regulon, TnrA regulon
The gene
Basic information
- Locus tag: BSU07560
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends (according to Swiss-Prot)
- Protein family: polysaccharide lyase 1 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- extracellular (signal peptide), major constituent of the secretome PubMed
Database entries
- UniProt: P39116
- KEGG entry: [3]
- E.C. number: 4.2.2.2
Additional information
Expression and regulation
- Operon: pel PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Massimiliano Marvasi, Pieter T Visscher, Lilliam Casillas Martinez
Exopolymeric substances (EPS) from Bacillus subtilis: polymers and genes encoding their synthesis.
FEMS Microbiol Lett: 2010, 313(1);1-9
[PubMed:20735481]
[WorldCat.org]
[DOI]
(I p)
Original publications
