Difference between revisions of "PdeH"
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|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''pdeH'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''comB, yufA '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yuxH, comB, yufA '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || degradation of c-di-GMP | |style="background:#ABCDEF;" align="center"|'''Function''' || degradation of c-di-GMP | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31740 | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31740 pdeH] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 5.36 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 5.36 | ||
| Line 101: | Line 101: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[ | + | * '''Operon:''' ''[[pdeH]]'' {{PubMed|2507523}} |
| − | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yuxH_3258037_3259266_-1 | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yuxH_3258037_3259266_-1 pdeH] {{PubMed|22383849}} |
| − | * '''Sigma factor:''' [[SigA]] {{PubMed|2507523}} | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|2507523}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 134: | Line 134: | ||
=References= | =References= | ||
| − | <pubmed>14651647,15687200,2507523 22821967</pubmed> | + | <pubmed>14651647,15687200,2507523 22821967 23893111 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 11:22, 10 August 2013
- Description: c-di-GMP degrading phosphodiesterase
| Gene name | pdeH |
| Synonyms | yuxH, comB, yufA |
| Essential | no |
| Product | c-di-GMP degrading phosphodiesterase |
| Function | degradation of c-di-GMP |
| Gene expression levels in SubtiExpress: pdeH | |
| MW, pI | 47 kDa, 5.36 |
| Gene length, protein length | 1227 bp, 409 aa |
| Immediate neighbours | yuzC, pncB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
metabolism of signalling nucleotides, motility and chemotaxis
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU31740
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: (2R)-2-phospho-3-sulfolactate + H2O = (2R)-3-sulfolactate + phosphate (according to Swiss-Prot)
- Protein family: comB family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- contains an EAL domain PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P14203
- KEGG entry: [3]
- E.C. number: 3.1.3.71
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Xiaohui Gao, Sampriti Mukherjee, Paige M Matthews, Loubna A Hammad, Daniel B Kearns, Charles E Dann
Functional characterization of core components of the Bacillus subtilis cyclic-di-GMP signaling pathway.
J Bacteriol: 2013, 195(21);4782-92
[PubMed:23893111]
[WorldCat.org]
[DOI]
(I p)
Yun Chen, Yunrong Chai, Jian-hua Guo, Richard Losick
Evidence for cyclic Di-GMP-mediated signaling in Bacillus subtilis.
J Bacteriol: 2012, 194(18);5080-90
[PubMed:22821967]
[WorldCat.org]
[DOI]
(I p)
Masaya Fujita, José Eduardo González-Pastor, Richard Losick
High- and low-threshold genes in the Spo0A regulon of Bacillus subtilis.
J Bacteriol: 2005, 187(4);1357-68
[PubMed:15687200]
[WorldCat.org]
[DOI]
(P p)
Virginie Molle, Masaya Fujita, Shane T Jensen, Patrick Eichenberger, José E González-Pastor, Jun S Liu, Richard Losick
The Spo0A regulon of Bacillus subtilis.
Mol Microbiol: 2003, 50(5);1683-701
[PubMed:14651647]
[WorldCat.org]
[DOI]
(P p)
Y Weinrauch, N Guillen, D A Dubnau
Sequence and transcription mapping of Bacillus subtilis competence genes comB and comA, one of which is related to a family of bacterial regulatory determinants.
J Bacteriol: 1989, 171(10);5362-75
[PubMed:2507523]
[WorldCat.org]
[DOI]
(P p)
