Difference between revisions of "PdaA"

From SubtiWiki
Jump to: navigation, search
(Expression and regulation)
Line 92: Line 92:
 
* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|12374835,15699190}}
 
* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|12374835,15699190}}
  
* '''Regulation:''' expressed during sporulation ([[SigG]]) {{PubMed|12374835,15699190}}
+
* '''Regulation:''' expressed late during sporulation in the forespore ([[SigG]]) {{PubMed|12374835,15699190}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
* '''Additional information:'''  
+
* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 17:32, 14 May 2010

  • Description: polysaccharide deacetylase, required for germination

Gene name pdaA
Synonyms yfjS
Essential no
Product polysaccharide deacetylase
Function germination
MW, pI 29 kDa, 7.318
Gene length, protein length 789 bp, 263 aa
Immediate neighbours yfjT, yfjR
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YfjS context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU07980

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: polysaccharide deacetylase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: expressed late during sporulation in the forespore (SigG) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References