Difference between revisions of "PatA"

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(References)
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1176 bp, 392 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1176 bp, 392 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kinA]]'', ''[[cheV]]''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kinA]]'', ''[[ykzT]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13273&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13273&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''

Revision as of 09:34, 3 December 2012

  • Description: aminotransferase

Gene name patA
Synonyms uat
Essential yes PubMed
Product aminotransferase
Function biosynthesis of lysine and peptidoglycan
Gene expression levels in SubtiExpress: patA
Metabolic function and regulation of this protein in SubtiPathways:
Lys, Thr
MW, pI 43 kDa, 6.005
Gene length, protein length 1176 bp, 392 aa
Immediate neighbours kinA, ykzT
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
PatA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PatA expression.png















Categories containing this gene/protein

Cell wall synthesis, biosynthesis/ acquisition of amino acids, Biosynthesis of cell wall components, essential genes


This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU14000

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: class-I pyridoxal-phosphate-dependent aminotransferase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed