Difference between revisions of "OpuCA"
| Line 39: | Line 39: | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
| − | + | <br/><br/> | |
| − | |||
| − | |||
| − | |||
| − | |||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| Line 51: | Line 47: | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[OpcR regulon]]}} | |
=The gene= | =The gene= | ||
| Line 116: | Line 112: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=opuCA_3469860_3471002_-1 opuCA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=opuCA_3469860_3471002_-1 opuCA] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** induced by salt stress {{PubMed|10216873}} | + | ** induced by salt stress {{PubMed|23960087,10216873}} |
| + | ** repressed by choline ([[OpcR]]) {{PubMed|23960087}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[OpcR]]: transcription repression {{PubMed|23960087}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 145: | Line 143: | ||
=References= | =References= | ||
| − | <pubmed>10092453,9925583,10216873,18763711, 21296969 </pubmed> | + | <pubmed>10092453,9925583,10216873,18763711, 21296969 23960087</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 07:53, 22 August 2013
- Description: glycine betaine/carnitine/choline ABC transporter (ATP-binding protein)
| Gene name | opuCA |
| Synonyms | yvbE |
| Essential | no |
| Product | glycine betaine/carnitine/choline ABC transporter (ATP-binding protein) |
| Function | compatible solute transport |
| Gene expression levels in SubtiExpress: opuCA | |
| Interactions involving this protein in SubtInteract: OpuCA | |
| Metabolic function and regulation of this protein in SubtiPathways: Stress | |
| MW, pI | 43 kDa, 6.554 |
| Gene length, protein length | 1140 bp, 380 aa |
| Immediate neighbours | opuCB, yvbF |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
ABC transporters, coping with hyper-osmotic stress, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU33830
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ABC transporter family (according to Swiss-Prot)
- Paralogous protein(s): OpuBA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: associated to the membrane (via OpuCB-OpuCD) PubMed
Database entries
- Structure:
- UniProt: O34992
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
