Difference between revisions of "OpuCA"

From SubtiWiki
Jump to: navigation, search
Line 14: Line 14:
 
|style="background:#ABCDEF;" align="center"|'''Function''' || compatible solute transport
 
|style="background:#ABCDEF;" align="center"|'''Function''' || compatible solute transport
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU33830 opuCA]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33830 opuCA]
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/OpuCA OpuCA]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/OpuCA OpuCA]
Line 26: Line 26:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[opuCB]]'', ''[[yvbF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[opuCB]]'', ''[[yvbF]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15388&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33830 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33830 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33830 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:opuCA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:opuCA_context.gif]]

Revision as of 13:52, 13 May 2013

  • Description: glycine betaine/carnitine/choline ABC transporter (ATP-binding protein)

Gene name opuCA
Synonyms yvbE
Essential no
Product glycine betaine/carnitine/choline
ABC transporter (ATP-binding protein)
Function compatible solute transport
Gene expression levels in SubtiExpress: opuCA
Interactions involving this protein in SubtInteract: OpuCA
Metabolic function and regulation of this protein in SubtiPathways:
Stress
MW, pI 43 kDa, 6.554
Gene length, protein length 1140 bp, 380 aa
Immediate neighbours opuCB, yvbF
Sequences Protein DNA Advanced_DNA
Genetic context
OpuCA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
OpuCA expression.png




























Categories containing this gene/protein

ABC transporters, coping with hyper-osmotic stress, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU33830

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s): OpuBA

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • induced by salt stress PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References