Difference between revisions of "Nth"

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* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1P59 1P59] (complex with DNA, Geobacillus stearothermophilus)
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1P59 1P59] (complex with DNA, Geobacillus stearothermophilus)
  
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P39788 P39788]
+
* '''UniProt:''' [http://www.uniprot.org/uniprot/P39788 P39788]
  
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU22340]
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU22340]

Revision as of 13:17, 20 July 2009

  • Description: endonuclease III

Gene name nth
Synonyms jooB, ypoB
Essential no
Product endonuclease III
Function DNA repair
MW, pI 24 kDa, 9.277
Gene length, protein length 657 bp, 219 aa
Immediate neighbours ypoC, dnaD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
Nth context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU22340

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate (according to Swiss-Prot)
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 1P59 (complex with DNA, Geobacillus stearothermophilus)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References