Difference between revisions of "NicK"

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* '''Description:''' DNA relaxase, similar to transposon protein <br/><br/>
  
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || conjugation of ICE BS1
 
|style="background:#ABCDEF;" align="center"|'''Function''' || conjugation of ICE BS1
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04870 nicK]
 
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 40 kDa, 5.131   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 40 kDa, 5.131   
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|colspan="2" | '''Genetic context''' <br/> [[Image:ydcR_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydcR_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydcR_534773_535831_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:nicK_expression.png|500px]]
 
 
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* '''Operon:'''  
 
* '''Operon:'''  
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydcR_534773_535831_1 nicK] {{PubMed|22383849}}
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* '''[[Sigma factor]]:'''  
 
 
* '''Sigma factor:'''  
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
* '''Additional information:'''
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* '''Additional information:'''  
  
 
=Biological materials =
 
=Biological materials =

Revision as of 11:31, 7 August 2012

  • Description: DNA relaxase, similar to transposon protein

Gene name nicK
Synonyms ydcR
Essential no
Product DNA relaxase, similar to transposon protein
Function conjugation of ICE BS1
MW, pI 40 kDa, 5.131
Gene length, protein length 1056 bp, 352 aa
Immediate neighbours ydcQ , ydcS
Gene sequence (+200bp) Protein sequence
Genetic context
YdcR context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

mobile genetic elements

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU04870

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: plasmid replication initiation factor family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Elisabeth Grohmann
Autonomous plasmid-like replication of Bacillus ICEBs1: a general feature of integrative conjugative elements?
Mol Microbiol: 2010, 75(2);261-3
[PubMed:19943906] [WorldCat.org] [DOI] (I p)

Original Publications