nicK

nicK
168

DNA relaxase, similar to transposon protein

locus
BSU_04870
Molecular weight
40.78 kDa
pI
5.13
Protein length
Gene length
function
conjugation of ICE BS1
product
DNA relaxase, similar to transposon protein
essential
no
ec
null
synonyms
nicK, ydcR

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG2946 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
534,773  535,831
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The protein
Protein family
plasmid replication initiation factor family (single member, according to UniProt)
Structure
[PDB|4CIJ] (from Geobacillus stearothermophilus, corresponds to aa 26 ... 289, 33% identity) [pubmed|26792891]
[AF|P96635]
Expression and Regulation
Operons
genes
[gene|EE2A4068CBD7A2F852E582E2EDA4148381F1CD61|xis]-[gene|2227923C603B290AB276238F789D71584FB07DF3|ydzL]-[gene|34451538F10B4ABCFC8A236C8C905A20D989EBCF|devI]-[gene|C042792D9A643DCFF4A851EFECA3CF2C31E1EDAF|ydcP]-[gene|4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0|ydcQ]-[gene|8E179976C35FE09F92A191D00E497ED4BF28F571|nicK]-[gene|886B2132717BA4C72433ABE351C5791C9DE1432A|S172]-[gene|1699CFBF5400CAF43C6DAE8ADCCE5A360B31F2E9|ydcS]-[gene|9D4918852A1856B1CDD72D49AEA75E51A8602BB6|ydcT]-[gene|62CEABA069CA2970F22B7E0C369D540A2A027A8D|yddA]-[gene|A0AFD543582D2FE8B1139CF69B7B1F7FF0F80265|conB]-[gene|F273A8817E66B44D58FC2BCB6576A30D8616B750|conC]-[gene|F1F898D7A9FDF78D2E5E8F3BF605E0F735D0542A|conD]-[gene|D20F724D8C3E8C758A9FADF133CD43F066BD8D48|conE]-[gene|B3A07E2A61151C33B7C65D1BC58B97BFDB76852D|yddF]-[gene|3356A43B83E2D4D66098F17A751F0912C1553398|conG]-[gene|8D9D81E05BAA8697F002BB1B8DBC5ABBA557353F|cwlT]-[gene|2E4FF80C857B3F40BA835814EC40D6562721AEFE|yddI]-[gene|2FB1C9435AE924F8E450AFA81F800196A871F2D0|yddJ]
description
[pubmed|22383849]
regulatory mechanism
[protein|DD1C8F3A4809785BD6A6047D39B42AB2C605E161|immR]: repression, [Pubmed|17511812], in [regulon|protein:DD1C8F3A4809785BD6A6047D39B42AB2C605E161|immR regulon]
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[gene|EE2A4068CBD7A2F852E582E2EDA4148381F1CD61|xis]->[gene|2FB1C9435AE924F8E450AFA81F800196A871F2D0|yddJ]

2024-03-03 22:58:45

Bzhu

47

9225e26ee70027d168e8ea0db13fb48c93ef1ef8

DE8D2BDC2F23AB45C58B0FE511E7B4816A65A489

Biological materials
Mutant
BKE04870 ([gene|8E179976C35FE09F92A191D00E497ED4BF28F571|nicK]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04870 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_GCTCATCCATTCGCTTCGCT,  downstream forward: _UP4_TAAAACCAAGCTGCTAAACC
BKK04870 ([gene|8E179976C35FE09F92A191D00E497ED4BF28F571|nicK]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04870 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_GCTCATCCATTCGCTTCGCT,  downstream forward: _UP4_TAAAACCAAGCTGCTAAACC
References
Reviews
19943906
Original Publications
17693500,19943900,26792891

8E179976C35FE09F92A191D00E497ED4BF28F571

Page visits: 1570

Time of last update: 2024-03-28 16:26:43

Author of last update: Jstuelk