Difference between revisions of "Ndh"

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=Expression and regulation=
 
=Expression and regulation=
 
+
* '''Operon:''' ''[[yjlC]]-[[ndh]]'' {{PubMed|17015645}}
* '''Operon:'''  
 
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
  
* '''Regulation:'''  
+
* '''Regulation:'''
** [[RelA]] dependent downregulation (Class I) during stringent response {{PubMed|11948165}}
+
** [[RelA]] dependent downregulation (Class I) during stringent response {{PubMed|11948165}}  
** induced under anaerobic conditions ([[Rex]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17015645 PubMed]
+
** induced under anaerobic conditions ([[Rex]]) {{PubMed|17015645}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
** [[Rex]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/17015645 PubMed]
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** [[Rex]]: transcription repression {{PubMed|17015645}}
 
 
 
* '''Additional information:'''
 
* '''Additional information:'''
  
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=References=
 
=References=
  
<pubmed>17015645,,17015645,18763711, </pubmed>
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<pubmed>17015645,,11948165,18763711, </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 17:53, 12 June 2010

  • Description: NADH dehydrogenase (Menaquinone 7 & no proton)

Gene name ndh
Synonyms yjlD
Essential no
Product NADH dehydrogenase (Menaquinone 7 & no proton)
Function respiration
MW, pI 41 kDa, 6.289
Gene length, protein length 1176 bp, 392 aa
Immediate neighbours yjlC, uxaC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YjlD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU12290

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: NADH dehydrogenase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: membrane associated PubMed

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
    • induced under anaerobic conditions (Rex) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)

Smita Gyan, Yoshihiko Shiohira, Ichiro Sato, Michio Takeuchi, Tsutomu Sato
Regulatory loop between redox sensing of the NADH/NAD(+) ratio by Rex (YdiH) and oxidation of NADH by NADH dehydrogenase Ndh in Bacillus subtilis.
J Bacteriol: 2006, 188(20);7062-71
[PubMed:17015645] [WorldCat.org] [DOI] (P p)

Christine Eymann, Georg Homuth, Christian Scharf, Michael Hecker
Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.
J Bacteriol: 2002, 184(9);2500-20
[PubMed:11948165] [WorldCat.org] [DOI] (P p)