Difference between revisions of "MetS"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00380&redirect=T BSU00380]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/metS.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/metS.html]
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00380&redirect=T BSU00380]
  
 
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1WE0 1WE0] (from ''Thermus thermophilus hb8 mutant'', 40% identity, 57% similarity) {{PubMed|10673435}}
 
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1WE0 1WE0] (from ''Thermus thermophilus hb8 mutant'', 40% identity, 57% similarity) {{PubMed|10673435}}

Revision as of 12:46, 2 April 2014

  • Description: methionyl-tRNA synthetase

Gene name metS
Synonyms
Essential yes PubMed
Product methionyl-tRNA synthetase
Function translation
Gene expression levels in SubtiExpress: metS
Metabolic function and regulation of this protein in SubtiPathways:
metS
MW, pI 76 kDa, 4.958
Gene length, protein length 1992 bp, 664 aa
Immediate neighbours abrB, yabD
Sequences Protein DNA DNA_with_flanks
Genetic context
MetS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
MetS expression.png




























Categories containing this gene/protein

translation, essential genes

This gene is a member of the following regulons

Spo0A regulon

The gene

Basic information

  • Locus tag: BSU00380

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met) (according to Swiss-Prot)
  • Protein family: tRNA-binding domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification: phosphorylated on Ser-652 PubMed
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1WE0 (from Thermus thermophilus hb8 mutant, 40% identity, 57% similarity) PubMed
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Operon: metS
  • Sigma factor:
  • Regulation:
    • repressed under conditions that trigger sporulation (Spo0A) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References