Difference between revisions of "Main Page"

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<big>'''Paper of the month: May 2012'''</big>  
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<big>'''Paper of the month: June 2012'''</big>  
* [http://www.ncbi.nlm.nih.gov/pubmed/22517742 Elsholz ''et al''.] from the lab of [[Ulf Gerth]] demonstrate that protein phosphorylation on arginine residues is of great importance for ''B. subtilis''. In addition to the previously identified target [[CtsR]], 86 proteins are shown to be  phosphorylated on arginine. The protein arginine kinase and phosphatase, [[McsB]] and [[YwlE]], respectively, may thus have an important regulatory role in ''B. subtilis''.
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* [http://www.ncbi.nlm.nih.gov/pubmed/22541437 Kolodkin-Gal ''et al''.] from the labs of [[Roberto Kolter]] and [[Richard Losick]] demonstrate that D-amino acids produced by [[RacX]] and [[YlmE]] and norspermidine produced by [[GabT]] and [[YaaO]] act together in preventing [[biofilm formation]] and triggering biofilm disassembly.
* '''Relevant ''Subti''Wiki pages:'''  [[Ulf Gerth]], [[Kürsad Turgay]], [[Ulrike Mäder]], [[Dörte Becher]], [[Michael Hecker]], [[phosphoproteins]], [[protein kinases and phosphatases]], [[McsB]], [[YwlE]]
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* '''Relevant ''Subti''Wiki pages:'''  [[Roberto Kolter]], [[Richard Losick]], [[biofilm formation]], [[RacX]], [[YlmE]], [[GabT]], [[YaaO]]
<pubmed>22517742</pubmed>
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<pubmed>22541437</pubmed>
 
* [[Previous papers of the month]]
 
* [[Previous papers of the month]]
  

Revision as of 18:33, 3 June 2012

Welcome to SubtiWiki! - Bacillus subtilis annotation the "wiki" way!

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Contact: General Microbiology, University of Göttingen, send mail


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New: Subtiwiki is now on Facebook - please give it a +1!


Now online: A description of SubtiWiki, SubtiPathways, and SubtInteract in the 2012 Database issue of Nucleic Acids Research

Ulrike Mäder, Arne G Schmeisky, Lope A Flórez, Jörg Stülke
SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis.
Nucleic Acids Res: 2012, 40(Database issue);D1278-87
[PubMed:22096228] [WorldCat.org] [DOI] (I p)



Paper of the month: June 2012

Ilana Kolodkin-Gal, Shugeng Cao, Liraz Chai, Thomas Böttcher, Roberto Kolter, Jon Clardy, Richard Losick
A self-produced trigger for biofilm disassembly that targets exopolysaccharide.
Cell: 2012, 149(3);684-92
[PubMed:22541437] [WorldCat.org] [DOI] (I p)


New procedure for account creation:

  • Due to massive spam attacks, we had to change our policy for the creation of accounts. If you want to create an account, just send me a mail. We will create the account for you as quickly as possible, then you can change your password. This does not affect existing accounts, which remain active.
  • Please remember that all members of the Bacillus community are invited to create accounts and to contribute to SubtiWiki!



News in SubtiWiki:


Genes (examples) Additional pages
spo0A SubtiPathways
glnA Lists of genes, proteins and RNAs
rny Categories
psdA Regulons
pckA methods
dnaA metabolism
rnpA protein-protein interactions
sigB genome-wide analyses
ptkA list of plasmids
mreC labs working on Bacillus
ccpA the people behind SubtiWiki
sr1 template


Publications describing SubtiWiki and SubtiPathways:

Lope A Flórez, Sebastian F Roppel, Arne G Schmeisky, Christoph R Lammers, Jörg Stülke
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki.
Database (Oxford): 2009, 2009;bap012
[PubMed:20157485] [WorldCat.org] [DOI] (I p)

Christoph R Lammers, Lope A Flórez, Arne G Schmeisky, Sebastian F Roppel, Ulrike Mäder, Leendert Hamoen, Jörg Stülke
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis.
Microbiology (Reading): 2010, 156(Pt 3);849-859
[PubMed:19959575] [WorldCat.org] [DOI] (I p)