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<big>'''Paper of the month: September 2011'''</big>  
 
<big>'''Paper of the month: September 2011'''</big>  
* A series of papers deals with [[RNases|RNA processing and degradation]] in ''B. subtilis''. Three papers establish that [[rny|RNase Y]] is the functional equivalent of RNase E from ''E. coli''. Moreover, the role of [[rnjA|RNase J1]] in endonucleolytic cleavage of the trp leader mRNA is demonstrated.
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* '''October 2011'''
* '''Relevant ''Subti''Wiki pages:'''  [[David Bechhofer]], [[Rick Lewis]], [[Ulrike Mäder]], [[Harald Putzer]], [[Jörg Stülke]], [[RNases]], [[RNA degradosome]], [[rny|RNase Y]], [[RNase Y targets]], [[rnjA|RNase J1]]
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** [http://www.ncbi.nlm.nih.gov/pubmed/21925382 Richards ''et al''.] identify the [[nudix hydrolase]] [[RppH]] as the pyrophosphohydrolase that triggers 5'-exonucleolytic degradation of mRNA by [[rnjA|RNase J1]] in ''B. subtilis''.
<pubmed>21862575 </pubmed>
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** '''Relevant ''Subti''Wiki pages:'''  [[David Bechhofer]], [[Ciaran Condon]], [[RNases|RNA processing and degradation]], [[nudix hydrolase]], [[RppH]], [[rnjA|RNase J1]]  
<big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
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<pubmed>21925382</pubmed>
<big>'''RNA processing in ''Bacillus subtilis'': identification of targets of the essential RNase Y.''' </big>
 
<big>Mol Microbiol. 2011 Aug 4. doi: 10.1111/j.1365-2958.2011.07777.x. [Epub ahead of print] </big>
 
[http://www.ncbi.nlm.nih.gov/pubmed/21815947 PubMed:21815947]
 
<pubmed>21803996 21843271 21815947</pubmed>
 
 
* [[Previous papers of the month]]
 
* [[Previous papers of the month]]
  

Revision as of 09:13, 3 October 2011

Welcome to SubtiWiki! - Bacillus subtilis annotation the "wiki" way!

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Contact: General Microbiology, University of Göttingen, send mail


Upcoming events:

  • April 16 - 19, 2012: The 5th European Spore Conference will take place in London, UK. contact, conference website
  • April 24 - 25, 2012: The BACELL meeting 2012 will be organized by Kevin Devine in Dublin, Ireland. contact

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Paper of the month: September 2011

Jamie Richards, Quansheng Liu, Olivier Pellegrini, Helena Celesnik, Shiyi Yao, David H Bechhofer, Ciarán Condon, Joel G Belasco
An RNA pyrophosphohydrolase triggers 5'-exonucleolytic degradation of mRNA in Bacillus subtilis.
Mol Cell: 2011, 43(6);940-9
[PubMed:21925382] [WorldCat.org] [DOI] (I p)


New procedure for account creation:

  • Due to massive spam attacks, we had to change our policy for the creation of accounts. If you want to create an account, just send me a mail. We will create the account for you as quickly as possible, then you can change your password. This does not affect existing accounts, which remain active.
  • Please remember that all members of the Bacillus community are invited to create accounts and to contribute to SubtiWiki!



News in SubtiWiki:


Genes (examples) Additional pages
spo0A SubtiPathways
glnA Lists of genes, proteins and RNAs
rny Categories
psdA Regulons
pckA methods
dnaA metabolism
rnpA protein-protein interactions
sigB genome-wide analyses
ptkA list of plasmids
mreC labs working on Bacillus
ccpA the people behind SubtiWiki
sr1 template


Publications describing SubtiWiki and SubtiPathways:

Lope A Flórez, Sebastian F Roppel, Arne G Schmeisky, Christoph R Lammers, Jörg Stülke
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki.
Database (Oxford): 2009, 2009;bap012
[PubMed:20157485] [WorldCat.org] [DOI] (I p)

Christoph R Lammers, Lope A Flórez, Arne G Schmeisky, Sebastian F Roppel, Ulrike Mäder, Leendert Hamoen, Jörg Stülke
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis.
Microbiology (Reading): 2010, 156(Pt 3);849-859
[PubMed:19959575] [WorldCat.org] [DOI] (I p)