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<big>'''Paper of the month: September 2011'''</big>  
 
<big>'''Paper of the month: September 2011'''</big>  
 
* A series of papers deals with [[RNases|RNA processing and degradation]] in ''B. subtilis''. Three papers establish that [[rny|RNase Y]] is the functional equivalent of RNase E from ''E. coli''. Moreover, the role of [[rnjA|RNase J1]] in endonucleolytic cleavage of the trp leader mRNA is demonstrated.
 
* A series of papers deals with [[RNases|RNA processing and degradation]] in ''B. subtilis''. Three papers establish that [[rny|RNase Y]] is the functional equivalent of RNase E from ''E. coli''. Moreover, the role of [[rnjA|RNase J1]] in endonucleolytic cleavage of the trp leader mRNA is demonstrated.
* '''Relevant ''Subti''Wiki pages:'''  [[David Bechhofer]], [[Rick Lewis]], [[Ulrike Mäder]], [[Harald Putzer]], [[Jörg Stülke]], [[RNases]], [[RNA degradosome]], [[rny|RNase Y]], [[rnjA|RNase J1]]
+
* '''Relevant ''Subti''Wiki pages:'''  [[David Bechhofer]], [[Rick Lewis]], [[Ulrike Mäder]], [[Harald Putzer]], [[Jörg Stülke]], [[RNases]], [[RNA degradosome]], [[rny|RNase Y]], [[RNase Y targets]], [[rnjA|RNase J1]]
 
<pubmed>21862575 </pubmed>
 
<pubmed>21862575 </pubmed>
 
  <big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
 
  <big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>

Revision as of 14:07, 2 September 2011

Welcome to SubtiWiki! - Bacillus subtilis annotation the "wiki" way!

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Contact: General Microbiology, University of Göttingen, send mail


Upcoming events:

  • April 16 - 19, 2012: The 5th European Spore Conference will take place in London, UK. contact, conference website
  • April 24 - 25, 2012: The BACELL meeting 2012 will be organized by Kevin Devine in Dublin, Ireland. contact

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Paper of the month: September 2011

Gintaras Deikus, David H Bechhofer
5' End-independent RNase J1 endonuclease cleavage of Bacillus subtilis model RNA.
J Biol Chem: 2011, 286(40);34932-40
[PubMed:21862575] [WorldCat.org] [DOI] (I p)

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 Aug 4. doi: 10.1111/j.1365-2958.2011.07777.x. [Epub ahead of print] 
PubMed:21815947

Patrice Bruscella, Karen Shahbabian, Soumaya Laalami, Harald Putzer
RNase Y is responsible for uncoupling the expression of translation factor IF3 from that of the ribosomal proteins L35 and L20 in Bacillus subtilis.
Mol Microbiol: 2011, 81(6);1526-41
[PubMed:21843271] [WorldCat.org] [DOI] (I p)

Martin Lehnik-Habrink, Joseph Newman, Fabian M Rothe, Alexandra S Solovyova, Cecilia Rodrigues, Christina Herzberg, Fabian M Commichau, Richard J Lewis, Jörg Stülke
RNase Y in Bacillus subtilis: a Natively disordered protein that is the functional equivalent of RNase E from Escherichia coli.
J Bacteriol: 2011, 193(19);5431-41
[PubMed:21803996] [WorldCat.org] [DOI] (I p)


New procedure for account creation:

  • Due to massive spam attacks, we had to change our policy for the creation of accounts. If you want to create an account, just send me a mail. We will create the account for you as quickly as possible, then you can change your password. This does not affect existing accounts, which remain active.
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News in SubtiWiki:


Genes (examples) Additional pages
spo0A SubtiPathways
glnA Lists of genes, proteins and RNAs
rny Categories
psdA Regulons
pckA methods
dnaA metabolism
rnpA protein-protein interactions
sigB genome-wide analyses
ptkA list of plasmids
mreC labs working on Bacillus
ccpA the people behind SubtiWiki
sr1 template


Publications describing SubtiWiki and SubtiPathways:

Lope A Flórez, Sebastian F Roppel, Arne G Schmeisky, Christoph R Lammers, Jörg Stülke
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki.
Database (Oxford): 2009, 2009;bap012
[PubMed:20157485] [WorldCat.org] [DOI] (I p)

Christoph R Lammers, Lope A Flórez, Arne G Schmeisky, Sebastian F Roppel, Ulrike Mäder, Leendert Hamoen, Jörg Stülke
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis.
Microbiology (Reading): 2010, 156(Pt 3);849-859
[PubMed:19959575] [WorldCat.org] [DOI] (I p)