Difference between revisions of "LrpC"

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* '''Description:''' sequence-independent DNA-binding and DNA-bending protein, facilitates the formation of higher order protein-DNA complexes <br/><br/>
  
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair and recombination
 
|style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair and recombination
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04250 lrpC]
 
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 7.743   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 7.743   
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|colspan="2" | '''Genetic context''' <br/> [[Image:lrpC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:lrpC_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=lrpC_476059_476493_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:lrpC_expression.png|500px]]
 
 
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__TOC__
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* '''Operon:''' ''lrpC'' {{PubMed|9341680}}
 
* '''Operon:''' ''lrpC'' {{PubMed|9341680}}
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=lrpC_476059_476493_1 lrpC] {{PubMed|22383849}}
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* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|10913073}}
 
 
* '''Sigma factor:''' [[SigA]] {{PubMed|10913073}}
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 11:17, 7 August 2012

  • Description: sequence-independent DNA-binding and DNA-bending protein, facilitates the formation of higher order protein-DNA complexes

Gene name lrpC
Synonyms ydaI
Essential no
Product DNA-binding and -bending protein
Function DNA repair and recombination
MW, pI 16 kDa, 7.743
Gene length, protein length 432 bp, 144 aa
Immediate neighbours ydzA, topB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
LrpC context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

DNA repair/ recombination

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU04250

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information: 50 ... 300 molecules per cell PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Paul Thaw, Svetlana E Sedelnikova, Tatyana Muranova, Sebastian Wiese, Sylvia Ayora, Juan C Alonso, Arie B Brinkman, Jasper Akerboom, John van der Oost, John B Rafferty
Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.
Nucleic Acids Res: 2006, 34(5);1439-49
[PubMed:16528101] [WorldCat.org] [DOI] (I e)

Gema López-Torrejón, María I Martínez-Jiménez, Silvia Ayora
Role of LrpC from Bacillus subtilis in DNA transactions during DNA repair and recombination.
Nucleic Acids Res: 2006, 34(1);120-9
[PubMed:16407330] [WorldCat.org] [DOI] (I e)

Christophe Beloin, Josette Jeusset, Bernard Revet, Gilles Mirambeau, Francoise Le Hégarat, Eric Le Cam
Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein.
J Biol Chem: 2003, 278(7);5333-42
[PubMed:12458218] [WorldCat.org] [DOI] (P p)

C Beloin, R Exley, A L Mahé, M Zouine, S Cubasch, F Le Hégarat
Characterization of LrpC DNA-binding properties and regulation of Bacillus subtilis lrpC gene expression.
J Bacteriol: 2000, 182(16);4414-24
[PubMed:10913073] [WorldCat.org] [DOI] (P p)

A Tapias, G López, S Ayora
Bacillus subtilis LrpC is a sequence-independent DNA-binding and DNA-bending protein which bridges DNA.
Nucleic Acids Res: 2000, 28(2);552-9
[PubMed:10606655] [WorldCat.org] [DOI] (I p)

C Beloin, S Ayora, R Exley, L Hirschbein, N Ogasawara, Y Kasahara, J C Alonso, F L Hégarat
Characterization of an lrp-like (lrpC) gene from Bacillus subtilis.
Mol Gen Genet: 1997, 256(1);63-71
[PubMed:9341680] [WorldCat.org] [DOI] (P p)