Difference between revisions of "LipC"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
* '''Description:''' lipase implicated in spore germination <br/><br/>
+
* '''Description:''' phospholipase implicated in spore germination <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
Line 10: Line 10:
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || lipase
+
|style="background:#ABCDEF;" align="center"| '''Product''' || spore coat phospholipase B
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || spore germination
 
|style="background:#ABCDEF;" align="center"|'''Function''' || spore germination
Line 38: Line 38:
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
 
+
defective in L-alanine-stimulated germination {{PubMed|20057119}}
 
=== Database entries ===
 
=== Database entries ===
  
Line 52: Line 52:
 
=== Basic information/ Evolution ===
 
=== Basic information/ Evolution ===
  
* '''Catalyzed reaction/ biological activity:'''  
+
* '''Catalyzed reaction/ biological activity:''' cleaves the fatty acids at the sn-1 and sn-2 positions of phospholipids {{PubMed|20057119}}
  
 
* '''Protein family:''' 'GDSL' lipolytic enzyme family (according to Swiss-Prot)
 
* '''Protein family:''' 'GDSL' lipolytic enzyme family (according to Swiss-Prot)
Line 72: Line 72:
 
* '''Interactions:'''
 
* '''Interactions:'''
  
* '''Localization:''' spore wall (according to Swiss-Prot),  mother cell [http://www.ncbi.nlm.nih.gov/sites/entrez/17220230 PubMed]
+
* '''Localization:''' spore coat {{PubMed|20057119}},  mother cell [http://www.ncbi.nlm.nih.gov/sites/entrez/17220230 PubMed]
  
 
=== Database entries ===
 
=== Database entries ===
Line 122: Line 122:
  
 
=References=
 
=References=
<pubmed> 17220230 9334321</pubmed>
+
<pubmed> 17220230 9334321 20057119 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 10:38, 9 January 2010

  • Description: phospholipase implicated in spore germination

Gene name lipC
Synonyms ycsK
Essential no
Product spore coat phospholipase B
Function spore germination
MW, pI 23 kDa, 5.839
Gene length, protein length 639 bp, 213 aa
Immediate neighbours kipR, yczI
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YcsK context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU04110

Phenotypes of a mutant

defective in L-alanine-stimulated germination PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: cleaves the fatty acids at the sn-1 and sn-2 positions of phospholipids PubMed
  • Protein family: 'GDSL' lipolytic enzyme family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed four hours after onset of sporulation (GerE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References