Difference between revisions of "KduD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of galacturonic acid  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of galacturonic acid  
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU22140 kduD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 6.498   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 6.498   

Revision as of 10:57, 7 August 2012

  • Description: 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase

Gene name kduD
Synonyms
Essential no
Product
Function utilization of galacturonic acid
Gene expression levels in SubtiExpress: kduD
MW, pI 27 kDa, 6.498
Gene length, protein length 762 bp, 254 aa
Immediate neighbours kduI, ypvA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
KduD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
KduD expression.png
























Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

CcpA regulon, KdgR regulon

The gene

Basic information

  • Locus tag: BSU22140

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 2-deoxy-D-gluconate + NAD+ = 3-dehydro-2-deoxy-D-gluconate + NADH (according to Swiss-Prot)
  • Protein family: phosphopentomutase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Jer-Sheng Lin, Gwo-Chyuan Shaw
Regulation of the kduID operon of Bacillus subtilis by the KdgR repressor and the ccpA gene: identification of two KdgR-binding sites within the kdgR-kduI intergenic region.
Microbiology (Reading): 2007, 153(Pt 3);701-710
[PubMed:17322190] [WorldCat.org] [DOI] (P p)