Difference between revisions of "KdgT"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypwA]]'', ''[[kdgA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypwA]]'', ''[[kdgA]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22090 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22090 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22090 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22090 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22090 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22090 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:kdgT_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:kdgT_context.gif]]

Revision as of 10:32, 14 May 2013

  • Description: 2-keto-3-deoxygluconate permease

Gene name kdgT
Synonyms
Essential no
Product 2-keto-3-deoxygluconate permease
Function utilization of galacturonic acid
Gene expression levels in SubtiExpress: kdgT
MW, pI 34 kDa, 8.935
Gene length, protein length 990 bp, 330 aa
Immediate neighbours ypwA, kdgA
Sequences Protein DNA DNA_with_flanks
Genetic context
KdgT context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
KdgT expression.png















Categories containing this gene/protein

transporters/ other, utilization of specific carbon sources

This gene is a member of the following regulons

CcpA regulon, KdgR regulon, Efp-dependent proteins

The gene

Basic information

  • Locus tag: BSU22090

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: sigma-70 factor family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:
    • translation is likely to require Efp due to the presence of several consecutive proline residues PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Petar Pujic, Rozenn Dervyn, Alexei Sorokin, S Dusko Ehrlich
The kdgRKAT operon of Bacillus subtilis: detection of the transcript and regulation by the kdgR and ccpA genes.
Microbiology (Reading): 1998, 144 ( Pt 11);3111-3118
[PubMed:9846747] [WorldCat.org] [DOI] (P p)