Difference between revisions of "KdgT"
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|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of galacturonic acid | |style="background:#ABCDEF;" align="center"|'''Function''' || utilization of galacturonic acid | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22090 kdgT] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 34 kDa, 8.935 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 34 kDa, 8.935 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypwA]]'', ''[[kdgA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypwA]]'', ''[[kdgA]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22090 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22090 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22090 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:kdgT_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:kdgT_context.gif]] | ||
Revision as of 13:07, 13 May 2013
- Description: 2-keto-3-deoxygluconate permease
| Gene name | kdgT |
| Synonyms | |
| Essential | no |
| Product | 2-keto-3-deoxygluconate permease |
| Function | utilization of galacturonic acid |
| Gene expression levels in SubtiExpress: kdgT | |
| MW, pI | 34 kDa, 8.935 |
| Gene length, protein length | 990 bp, 330 aa |
| Immediate neighbours | ypwA, kdgA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transporters/ other, utilization of specific carbon sources
This gene is a member of the following regulons
CcpA regulon, KdgR regulon, Efp-dependent proteins
The gene
Basic information
- Locus tag: BSU22090
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: sigma-70 factor family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P50847
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
- translation is likely to require Efp due to the presence of several consecutive proline residues PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Petar Pujic, Rozenn Dervyn, Alexei Sorokin, S Dusko Ehrlich
The kdgRKAT operon of Bacillus subtilis: detection of the transcript and regulation by the kdgR and ccpA genes.
Microbiology (Reading): 1998, 144 ( Pt 11);3111-3118
[PubMed:9846747]
[WorldCat.org]
[DOI]
(P p)
