Difference between revisions of "IspF"

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=== Database entries ===
 
=== Database entries ===
  
* '''Structure:'''
+
* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?structureId=1T0A 1T0A] (from ''Shewanella oneidensis'', 62% identity) {{PubMed|15502301}}
  
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/Q06756 Q06756]
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/Q06756 Q06756]
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=References=
 
=References=
  
<pubmed>15805528, 10482513 12270818 17458547 23840410 </pubmed>
+
<pubmed>15805528, 10482513 12270818 17458547 23840410 15502301 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 15:55, 12 July 2013

  • Description: 2-C-methyl-D-erythrol-2,4-cyclodiphosphate synthase, 5th step in the MEP pathway of isoprenoid biosynthesis

Gene name ispF
Synonyms yacN
Essential yes PubMed
Product 2-C-methyl-D-erythrol-2,4-cyclodiphosphate synthase
Function MEP pathway of isoprenoid biosynthesis
Gene expression levels in SubtiExpress: ispF
MW, pI 16 kDa, 5.398
Gene length, protein length 474 bp, 158 aa
Immediate neighbours ispD, gltX
Sequences Protein DNA DNA_with_flanks
Genetic context
YacN context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
IspF expression.png















Categories containing this gene/protein

biosynthesis of lipids, general stress proteins (controlled by SigB), essential genes

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU00910

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + CMP (according to Swiss-Prot)
  • Protein family: ispF family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1T0A (from Shewanella oneidensis, 62% identity) PubMed
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Becky M Hess, Junfeng Xue, Lye Meng Markillie, Ronald C Taylor, H Steven Wiley, Birgitte K Ahring, Bryan Linggi
Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics.
PLoS One: 2013, 8(6);e66104
[PubMed:23840410] [WorldCat.org] [DOI] (I e)

Mattijs K Julsing, Michael Rijpkema, Herman J Woerdenbag, Wim J Quax, Oliver Kayser
Functional analysis of genes involved in the biosynthesis of isoprene in Bacillus subtilis.
Appl Microbiol Biotechnol: 2007, 75(6);1377-84
[PubMed:17458547] [WorldCat.org] [DOI] (P p)

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)

Shuisong Ni, Howard Robinson, Gregory C Marsing, Dirksen E Bussiere, Michael A Kennedy
Structure of 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase from Shewanella oneidensis at 1.6 A: identification of farnesyl pyrophosphate trapped in a hydrophobic cavity.
Acta Crystallogr D Biol Crystallogr: 2004, 60(Pt 11);1949-57
[PubMed:15502301] [WorldCat.org] [DOI] (P p)

Tracey L Campbell, Eric D Brown
Characterization of the depletion of 2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase in Escherichia coli and Bacillus subtilis.
J Bacteriol: 2002, 184(20);5609-18
[PubMed:12270818] [WorldCat.org] [DOI] (P p)

A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513] [WorldCat.org] [DOI] (P p)