Difference between revisions of "GsiB"
| Line 1: | Line 1: | ||
| − | * '''Description:''' general stress protein <br/><br/> | + | * '''Description:''' general stress protein, prevents enzyme inactivation upon freeze-thaw treatments <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 12: | Line 12: | ||
|style="background:#ABCDEF;" align="center"| '''Product''' || general stress protein | |style="background:#ABCDEF;" align="center"| '''Product''' || general stress protein | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || response to water deficits |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04400 gsiB] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04400 gsiB] | ||
| Line 35: | Line 35: | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
| − | |||
| − | |||
| − | |||
| − | |||
<br/><br/> | <br/><br/> | ||
| Line 111: | Line 107: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gsiB_494506_494877_1 gsiB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gsiB_494506_494877_1 gsiB] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigB]], [[SigI]] [http://www.ncbi.nlm.nih.gov/sites/entrez/11157964 PubMed] | + | * '''[[Sigma factor]]:''' [[SigB]], [[SigI]] [http://www.ncbi.nlm.nih.gov/sites/entrez/11157964 PubMed] |
* '''Regulation:''' induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed] | * '''Regulation:''' induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed] | ||
| Line 139: | Line 135: | ||
=References= | =References= | ||
| − | + | <pubmed>9669336,12884008,7651322,11544224, 1378051 21421783 23861025 </pubmed> | |
| − | <pubmed>9669336,12884008,7651322,11544224, 1378051 </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 16:32, 25 July 2013
- Description: general stress protein, prevents enzyme inactivation upon freeze-thaw treatments
| Gene name | gsiB |
| Synonyms | |
| Essential | no |
| Product | general stress protein |
| Function | response to water deficits |
| Gene expression levels in SubtiExpress: gsiB | |
| MW, pI | 13 kDa, 5.145 |
| Gene length, protein length | 369 bp, 123 aa |
| Immediate neighbours | ydbA, ydbB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
[None Expression at a glance] PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB)
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04400
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P26907
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: gsiB PubMed
- Regulatory mechanism:
- Additional information: the mRNA is very stable (half-life > 15 min) PubMed
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
F Campos, C Cuevas-Velazquez, M A Fares, J L Reyes, A A Covarrubias
Group 1 LEA proteins, an ancestral plant protein group, are also present in other eukaryotes, and in the archeae and bacteria domains.
Mol Genet Genomics: 2013, 288(10);503-17
[PubMed:23861025]
[WorldCat.org]
[DOI]
(I p)
Ioanna-Areti Asteri, Effrossyni Boutou, Rania Anastasiou, Bruno Pot, Constantinos E Vorgias, Effie Tsakalidou, Konstantinos Papadimitriou
In silico evidence for the horizontal transfer of gsiB, a σ(B)-regulated gene in gram-positive bacteria, to lactic acid bacteria.
Appl Environ Microbiol: 2011, 77(10);3526-31
[PubMed:21421783]
[WorldCat.org]
[DOI]
(I p)
G Hambraeus, C von Wachenfeldt, L Hederstedt
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs.
Mol Genet Genomics: 2003, 269(5);706-14
[PubMed:12884008]
[WorldCat.org]
[DOI]
(P p)
A Petersohn, M Brigulla, S Haas, J D Hoheisel, U Völker, M Hecker
Global analysis of the general stress response of Bacillus subtilis.
J Bacteriol: 2001, 183(19);5617-31
[PubMed:11544224]
[WorldCat.org]
[DOI]
(P p)
B Jürgen, T Schweder, M Hecker
The stability of mRNA from the gsiB gene of Bacillus subtilis is dependent on the presence of a strong ribosome binding site.
Mol Gen Genet: 1998, 258(5);538-45
[PubMed:9669336]
[WorldCat.org]
[DOI]
(P p)
B Maul, U Völker, S Riethdorf, S Engelmann, M Hecker
sigma B-dependent regulation of gsiB in response to multiple stimuli in Bacillus subtilis.
Mol Gen Genet: 1995, 248(1);114-20
[PubMed:7651322]
[WorldCat.org]
[DOI]
(P p)
J P Mueller, G Bukusoglu, A L Sonenshein
Transcriptional regulation of Bacillus subtilis glucose starvation-inducible genes: control of gsiA by the ComP-ComA signal transduction system.
J Bacteriol: 1992, 174(13);4361-73
[PubMed:1378051]
[WorldCat.org]
[DOI]
(P p)
