Difference between revisions of "GidA"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rsmG]]'', ''[[thdF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rsmG]]'', ''[[thdF]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU41010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU41010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU41010 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU41010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU41010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU41010 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:gidA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:gidA_context.gif]]

Revision as of 11:46, 14 May 2013

  • Description: glucose-inhibited division protein, tRNA uridine 5-carboxymethylaminomethyl modification enzyme

Gene name gidA
Synonyms mnmG
Essential no
Product tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Function tRNA modification
Gene expression levels in SubtiExpress: gidA
Interactions involving this protein in SubtInteract: GidA
MW, pI 69 kDa, 6.326
Gene length, protein length 1884 bp, 628 aa
Immediate neighbours rsmG, thdF
Sequences Protein DNA DNA_with_flanks
Genetic context
GidA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
GidA expression.png















Categories containing this gene/protein

translation

This gene is a member of the following regulons

ComK regulon

The gene

Basic information

  • Locus tag: BSU41010

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: mnmG family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3G05 (the protein of E. coli, 51% identity)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Rong Shi, Magda Villarroya, Rafael Ruiz-Partida, Yunge Li, Ariane Proteau, Silvia Prado, Ismaïl Moukadiri, Alfonso Benítez-Páez, Rodrigo Lomas, John Wagner, Allan Matte, Adrián Velázquez-Campoy, M-Eugenia Armengod, Miroslaw Cygler
Structure-function analysis of Escherichia coli MnmG (GidA), a highly conserved tRNA-modifying enzyme.
J Bacteriol: 2009, 191(24);7614-9
[PubMed:19801413] [WorldCat.org] [DOI] (I p)

Mitsuo Ogura, Hirotake Yamaguchi, Kazuo Kobayashi, Naotake Ogasawara, Yasutaro Fujita, Teruo Tanaka
Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK.
J Bacteriol: 2002, 184(9);2344-51
[PubMed:11948146] [WorldCat.org] [DOI] (P p)

Jörg Sievers, Brian Raether, Marta Perego, Jeff Errington
Characterization of the parB-like yyaA gene of Bacillus subtilis.
J Bacteriol: 2002, 184(4);1102-11
[PubMed:11807071] [WorldCat.org] [DOI] (P p)