Difference between revisions of "GerPD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]]
 
|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU10690 gerPD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10690 gerPD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 6 kDa, 3.975   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 6 kDa, 3.975   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gerPE]]'', ''[[gerPC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gerPE]]'', ''[[gerPC]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12909&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10690 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10690 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10690 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:gerPD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:gerPD_context.gif]]

Revision as of 12:30, 13 May 2013

  • Description: spore germination protein, facilitates access of nutrient germinants to their cognate germinant receptors in spores’ inner membrane

Gene name gerPD
Synonyms yisE
Essential no
Product unknown
Function germination
Gene expression levels in SubtiExpress: gerPD
MW, pI 6 kDa, 3.975
Gene length, protein length 174 bp, 58 aa
Immediate neighbours gerPE, gerPC
Sequences Protein DNA Advanced_DNA
Genetic context
GerPD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
GerPD expression.png















Categories containing this gene/protein

germination

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU10690

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed during sporulation in the mother cell (SigK) PubMed
    • subject to negative regulation by GerE PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

J Behravan, H Chirakkal, A Masson, A Moir
Mutations in the gerP locus of Bacillus subtilis and Bacillus cereus affect access of germinants to their targets in spores.
J Bacteriol: 2000, 182(7);1987-94
[PubMed:10715007] [WorldCat.org] [DOI] (P p)