Difference between revisions of "GerKA"

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m (Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk)
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* '''Description:''' nutrient receptor <br/><br/>
  
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]] response to the combination of glucose, <br/>fructose, aspartate, and KCl
 
|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]] response to the combination of glucose, <br/>fructose, aspartate, and KCl
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03700 gerKA]
 
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/GerKA GerKA]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/GerKA GerKA]
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|colspan="2" | '''Genetic context''' <br/> [[Image:gerKA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:gerKA_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:gerKA_expression.png|500px]]
 
 
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* '''Operon:''' ''[[gerKA]]-[[gerKC]]-[[gerKB]]'' (according to [http://dbtbs.hgc.jp/COG/prom/gerKACB.html DBTBS])
 
* '''Operon:''' ''[[gerKA]]-[[gerKC]]-[[gerKB]]'' (according to [http://dbtbs.hgc.jp/COG/prom/gerKACB.html DBTBS])
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 gerKA] {{PubMed|22383849}}
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* '''[[Sigma factor]]:''' SigG {{PubMed|16707705}}
 
 
* '''Sigma factor:''' SigG {{PubMed|16707705}}
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 11:22, 7 August 2012

  • Description: nutrient receptor

Gene name gerKA
Synonyms
Essential no
Product nutrient receptor
Function germination response to the combination of glucose,
fructose, aspartate, and KCl
Interactions involving this protein in SubtInteract: GerKA
MW, pI 60 kDa, 5.206
Gene length, protein length 1632 bp, 544 aa
Immediate neighbours yczF, gerKC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
GerKA context.gif
This image was kindly provided by SubtiList




Categories containing this gene/protein

germination, membrane proteins

This gene is a member of the following regulons

SigG regulon, SpoVT regulon

The gene

Basic information

  • Locus tag: BSU03700

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: gerABKA family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed