Difference between revisions of "Fer"

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|style="background:#ABCDEF;" align="center"|'''Function''' || electron transfer  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || electron transfer  
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU23040 fer]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU23040 fer]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/Fer Fer]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/Fer Fer]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypbB]]'', ''[[ribU]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypbB]]'', ''[[ribU]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14220&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU23040 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU23040 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU23040 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:fer_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:fer_context.gif]]

Revision as of 13:10, 13 May 2013

  • Description: ferredoxin

Gene name fer
Synonyms ypbA
Essential no
Product ferredoxin
Function electron transfer
Gene expression levels in SubtiExpress: fer
Interactions involving this protein in SubtInteract: Fer
MW, pI 8 kDa, 3.509
Gene length, protein length 246 bp, 82 aa
Immediate neighbours ypbB, ribU
Sequences Protein DNA Advanced_DNA
Genetic context
Fer context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
Fer expression.png
























Categories containing this gene/protein

electron transport/ other

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU23040

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Amanda J Green, Andrew W Munro, Myles R Cheesman, Graeme A Reid, Claes von Wachenfeldt, Stephen K Chapman
Expression, purification and characterisation of a Bacillus subtilis ferredoxin: a potential electron transfer donor to cytochrome P450 BioI.
J Inorg Biochem: 2003, 93(1-2);92-9
[PubMed:12538057] [WorldCat.org] [DOI] (P p)