Difference between revisions of "Essential genes"

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Line 86: Line 86:
 
* ''[[era]]''
 
* ''[[era]]''
 
* ''[[obg]]''
 
* ''[[obg]]''
 +
* ''[[rbgA]]''
 +
* ''[[ysxC]]''
 +
* ''[[yqeH]]''
  
 
==== rRNA modification/maturation ====
 
==== rRNA modification/maturation ====
Line 98: Line 101:
 
* ''[[folD]]''
 
* ''[[folD]]''
 
* ''[[gcp]]''
 
* ''[[gcp]]''
 +
* ''[[trmD]]''
 +
* ''[[trmU]]''
 +
* ''[[ydiC]]''
 +
* ''[[yrvO]]''
  
 
==== Translation factors ====
 
==== Translation factors ====
Line 112: Line 119:
 
==== Translation/ other ====
 
==== Translation/ other ====
 
* ''[[map]]''
 
* ''[[map]]''
 +
* ''[[spoVC]]''
  
−
==== Protein secretion/ chaperones ====
+
==== Protein secretion/ chaperones/ protein quality control ====
 
* ''[[ffh]]''
 
* ''[[ffh]]''
 
* ''[[groEL]]''
 
* ''[[groEL]]''
 
* ''[[groES]]''
 
* ''[[groES]]''
 +
* ''[[prsA]]''
 +
* ''[[scr]]''
 +
* ''[[secA]]''
 +
* ''[[secE]]''
 +
* ''[[secY]]''
 +
* ''[[trxA]]''
 +
* ''[[trxB]]''
  
 
=== Cell envelope and cell division ===
 
=== Cell envelope and cell division ===
Line 137: Line 152:
 
* ''[[murG]]''
 
* ''[[murG]]''
 
* ''[[pbpB]]''
 
* ''[[pbpB]]''
 +
* ''[[racE]]''
 +
* ''[[tagB]]''
 +
* ''[[tagD]]''
 +
* ''[[tagF]]''
 +
* ''[[tagG]]''
 +
* ''[[tagH]]''
 +
* ''[[tagO]]''
 +
* ''[[uppS]]''
 +
* ''[[walK]]''
 +
* ''[[walR]]''
 +
* ''[[ykuQ]]''
 +
* ''[[ykuR]]''
  
 
==== Cell division ====
 
==== Cell division ====
Line 152: Line 179:
 
* ''[[mreC]]''
 
* ''[[mreC]]''
 
* ''[[mreD]]''
 
* ''[[mreD]]''
 +
* ''[[rodA]]''
  
 
=== Metabolism ===
 
=== Metabolism ===
Line 157: Line 185:
 
* ''[[odhB]]''
 
* ''[[odhB]]''
 
* ''[[pdhA]]''
 
* ''[[pdhA]]''
 +
* ''[[resB]]''
 +
* ''[[resC]]''
 +
* ''[[yumC]]''
  
 
==== Biosynthesis of amino acids ====
 
==== Biosynthesis of amino acids ====
Line 194: Line 225:
 
* ''[[nrdF]]''
 
* ''[[nrdF]]''
 
* ''[[nrdI]]''
 
* ''[[nrdI]]''
−
 
+
* ''[[prs]]''
 +
* ''[[pyrG]]''
 +
* ''[[tmk]]''
  
 
==== Biosynthesis of cofactors ====
 
==== Biosynthesis of cofactors ====
Line 211: Line 244:
 
* ''[[nadE]]''
 
* ''[[nadE]]''
 
* ''[[nadF]]''
 
* ''[[nadF]]''
 +
* ''[[ytaG]]''
  
 
==== Ion homeostasis ====
 
==== Ion homeostasis ====
Line 220: Line 254:
  
 
==== Biosynthesis of iron-sulphur clusters ====
 
==== Biosynthesis of iron-sulphur clusters ====
 +
* ''[[sufB]]''
 +
* ''[[sufC]]''
 +
* ''[[sufD]]''
 +
* ''[[sufS]]''
 +
* ''[[sufU]]''
  
 
==== Phosphate metabolism ====
 
==== Phosphate metabolism ====
 
* ''[[ppaC]]''
 
* ''[[ppaC]]''
 +
* ''[[yfkN]]''
  
 
=== DNA replication, modification, and chromosome maintenance ===
 
=== DNA replication, modification, and chromosome maintenance ===
Line 249: Line 289:
 
* ''[[parC]]''
 
* ''[[parC]]''
 
* ''[[parE]]''
 
* ''[[parE]]''
 +
* ''[[scpA]]''
 +
* ''[[smc]]''
 +
* ''[[ypuF]]''
 +
 +
==== DNA restriction/modification ====
 +
* ''[[ydiO]]''
 +
* ''[[ydiP]]''
  
 
=== RNA synthesis and degradation ===
 
=== RNA synthesis and degradation ===
Line 267: Line 314:
 
* ''[[pncB]]''
 
* ''[[pncB]]''
 
* ''[[rnc]]''
 
* ''[[rnc]]''
 +
* ''[[sknR]]''
 +
* ''[[yhdL]]''
  
 
=== Unknown ===
 
=== Unknown ===
Line 273: Line 322:
 
* ''[[ylaN]]''
 
* ''[[ylaN]]''
 
* ''[[yomL]]''
 
* ''[[yomL]]''
−
 
−
=== Other ===
 
−
 
−
* ''[[prs]]''
 
−
* ''[[prsA]]''
 
−
* ''[[pyrG]]''
 
−
* ''[[racE]]''
 
−
* ''[[rbgA]]''
 
−
* ''[[resB]]''
 
−
* ''[[resC]]''
 
−
 
−
* ''[[rodA]]''
 
−
 
−
 
−
* ''[[scpA]]''
 
−
* ''[[scr]]''
 
−
* ''[[secA]]''
 
−
* ''[[secE]]''
 
−
* ''[[secY]]''
 
−
 
−
* ''[[sknR]]''
 
−
* ''[[smc]]''
 
−
* ''[[spoVC]]''
 
−
 
−
* ''[[sufB]]''
 
−
* ''[[sufC]]''
 
−
* ''[[sufD]]''
 
−
* ''[[sufS]]''
 
−
* ''[[sufU]]''
 
−
* ''[[tagB]]''
 
−
* ''[[tagD]]''
 
−
* ''[[tagF]]''
 
−
* ''[[tagG]]''
 
−
* ''[[tagH]]''
 
−
* ''[[tagO]]''
 
−
 
−
* ''[[tmk]]''
 
−
* ''[[trmD]]''
 
−
* ''[[trmU]]''
 
−
 
−
* ''[[trxA]]''
 
−
* ''[[trxB]]''
 
−
 
−
* ''[[uppS]]''
 
−
 
−
* ''[[walK]]''
 
−
* ''[[walR]]''
 
−
 
−
* ''[[ydiC]]''
 
−
* ''[[ydiO]]''
 
−
* ''[[ydiP]]''
 
−
* ''[[yfkN]]''
 
−
* ''[[yhdL]]''
 
−
* ''[[ykuQ]]''
 
−
* ''[[ykuR]]''
 
−
 
−
* ''[[ypuF]]''
 
−
* ''[[yqeH]]''
 
−
* ''[[yrvO]]''
 
−
* ''[[ysxC]]''
 
−
* ''[[ytaG]]''
 
−
* ''[[yumC]]''
 
  
 
==Important original publications==
 
==Important original publications==
 
<pubmed>12682299 17114254 17005971 </pubmed>
 
<pubmed>12682299 17114254 17005971 </pubmed>
 
=Back to [[categories]]=
 
=Back to [[categories]]=

Revision as of 17:43, 17 October 2012

Parent category
Neighbouring categories
Related categories

none

Genes in this functional category

Protein synthesis, secretion and quality control

Aminoacyl-tRNA synthetases

Ribosomal proteins

Ribosome assembly

rRNA modification/maturation

tRNA modification/maturation

Translation factors

Translation/ other

Protein secretion/ chaperones/ protein quality control

Cell envelope and cell division

Cell wall synthesis

Cell division

Cell shape

Metabolism

Central energy metabolism

Biosynthesis of amino acids

Biosynthesis of lipids

Biosynthesis of nucleotides

Biosynthesis of cofactors

Ion homeostasis

Biosynthesis of iron-sulphur clusters

Phosphate metabolism

DNA replication, modification, and chromosome maintenance

DNA replication

Chromosome condensation/ segregation

DNA restriction/modification

RNA synthesis and degradation

Transcription

RNases

Detoxification systems

Unknown

Important original publications

Helena B Thomaides, Ella J Davison, Lisa Burston, Hazel Johnson, David R Brown, Alison C Hunt, Jeffery Errington, Lloyd Czaplewski
Essential bacterial functions encoded by gene pairs.
J Bacteriol: 2007, 189(2);591-602
[PubMed:17114254] [WorldCat.org] [DOI] (P p)

Alison Hunt, Joy P Rawlins, Helena B Thomaides, Jeff Errington
Functional analysis of 11 putative essential genes in Bacillus subtilis.
Microbiology (Reading): 2006, 152(Pt 10);2895-2907
[PubMed:17005971] [WorldCat.org] [DOI] (P p)

K Kobayashi, S D Ehrlich, A Albertini, G Amati, K K Andersen, M Arnaud, K Asai, S Ashikaga, S Aymerich, P Bessieres, F Boland, S C Brignell, S Bron, K Bunai, J Chapuis, L C Christiansen, A Danchin, M Débarbouille, E Dervyn, E Deuerling, K Devine, S K Devine, O Dreesen, J Errington, S Fillinger, S J Foster, Y Fujita, A Galizzi, R Gardan, C Eschevins, T Fukushima, K Haga, C R Harwood, M Hecker, D Hosoya, M F Hullo, H Kakeshita, D Karamata, Y Kasahara, F Kawamura, K Koga, P Koski, R Kuwana, D Imamura, M Ishimaru, S Ishikawa, I Ishio, D Le Coq, A Masson, C Mauël, R Meima, R P Mellado, A Moir, S Moriya, E Nagakawa, H Nanamiya, S Nakai, P Nygaard, M Ogura, T Ohanan, M O'Reilly, M O'Rourke, Z Pragai, H M Pooley, G Rapoport, J P Rawlins, L A Rivas, C Rivolta, A Sadaie, Y Sadaie, M Sarvas, T Sato, H H Saxild, E Scanlan, W Schumann, J F M L Seegers, J Sekiguchi, A Sekowska, S J Séror, M Simon, P Stragier, R Studer, H Takamatsu, T Tanaka, M Takeuchi, H B Thomaides, V Vagner, J M van Dijl, K Watabe, A Wipat, H Yamamoto, M Yamamoto, Y Yamamoto, K Yamane, K Yata, K Yoshida, H Yoshikawa, U Zuber, N Ogasawara
Essential Bacillus subtilis genes.
Proc Natl Acad Sci U S A: 2003, 100(8);4678-83
[PubMed:12682299] [WorldCat.org] [DOI] (P p)

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