|
|
| (11 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | * '''Description:''' 4.5 S RNA<br/><br/>
| |
| | | | |
| − | {| align="right" border="1" cellpadding="2"
| |
| − | |-
| |
| − | |style="background:#ABCDEF;" align="center"|'''Gene name'''
| |
| − | |''scr''
| |
| − | |-
| |
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
| |
| − | |-
| |
| − | |style="background:#ABCDEF;" align="center"| '''Essential''' || no
| |
| − | |-
| |
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || small cytoplasmic RNA (scRNA, 4.5S RNA),
| |
| | | | |
| − | signal recognition particle-like (SRP) component
| + | [[File:Example.jpg]] |
| − | |-
| |
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || presecretory protein translocation
| |
| − | |-
| |
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaJ]]'', ''[[dnaX]]''
| |
| − | |-
| |
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/scr_nucleotide.txt Gene sequence (+200bp) ]'''
| |
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/scr_protein.txt Protein sequence]'''
| |
| − | |-
| |
| − | |colspan="2" | '''Genetic context''' <br/> [[Image:scr_context.gif]]
| |
| − | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
| |
| − | |-
| |
| − | |}
| |
| − | | |
| − | __TOC__
| |
| − | | |
| − | <br/><br/><br/><br/><br/><br/>
| |
| − | | |
| − | = [[Categories]] containing this gene/protein =
| |
| − | {{SubtiWiki category|[[protein secretion]]}},
| |
| − | {{SubtiWiki category|[[ncRNA]]}}
| |
| − | | |
| − | = This gene is a member of the following [[regulons]] =
| |
| − | | |
| − | | |
| − | =The gene=
| |
| − | | |
| − | === Basic information ===
| |
| − | | |
| − | * '''Locus tag:'''
| |
| − | | |
| − | ===Phenotypes of a mutant ===
| |
| − | | |
| − | === Database entries ===
| |
| − | | |
| − | * '''DBTBS entry:''' no entry
| |
| − | | |
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00095]
| |
| − | | |
| − | * '''Structure:'''
| |
| − | | |
| − | === Additional information===
| |
| − | | |
| − | | |
| − | | |
| − | =The RNA=
| |
| − | | |
| − | === Basic information/ Evolution ===
| |
| − | | |
| − | * '''Catalyzed reaction/ biological activity:'''
| |
| − | | |
| − | === Extended information on the RNA===
| |
| − | | |
| − | * '''Kinetic information'''
| |
| − | | |
| − | * '''Interactions:''' [[Scr]]-[[Ffh]]
| |
| − | | |
| − | * '''Localization'''
| |
| − | | |
| − | === Database entries ===
| |
| − | | |
| − | * '''Structure''':
| |
| − | | |
| − | === Additional information===
| |
| − | | |
| − | =Expression and regulation=
| |
| − | | |
| − | * '''Operon:''' ''[[yaaJ]]-[[scr]], [[scr]]''
| |
| − | | |
| − | * '''Sigma factor:''' [[SigA]] (both promoters)
| |
| − | | |
| − | * '''Regulation:'''
| |
| − | | |
| − | * '''Regulatory mechanism:'''
| |
| − | | |
| − | * '''Additional information:''' transcribed as 354 nt precursor, cleaved at the 5' end by [[rnc| RNase III]] and at the 3' site by [[rnjA| RNase J1]] to yield a 275 nt molecule, final trimming to 271 nt sc RNA by [[rph| RNase PH]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17576666 PubMed]
| |
| − | | |
| − | =Biological materials =
| |
| − | | |
| − | * '''Mutant:'''
| |
| − | | |
| − | * '''Expression vector:'''
| |
| − |
| |
| − | * '''lacZ fusion:'''
| |
| − | | |
| − | =Labs working on this gene/protein=
| |
| − | | |
| − | [[David Bechhofer]], Mount Sinai School, New York, USA [http://www.mountsinai.org/Research/Centers%20Laboratories%20and%20Programs/Bechhofer%20Laboratory?citype=Physician&ciid=Bechhofer%20David%20H%201255565 Homepage]
| |
| − | | |
| − | =Your additional remarks=
| |
| − | | |
| − | =References=
| |
| − | | |
| − | <pubmed>9346318,2468993,17576666, </pubmed>
| |
| − | | |
| − | [[Category:small RNA]]
| |
