Difference between revisions of "DtpT"

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|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of di- and tripeptides
 
|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of di- and tripeptides
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03670 yclF]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03670 yclF]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 53 kDa, 9.92   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 53 kDa, 9.92   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yclE]]'', ''[[yclG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yclE]]'', ''[[yclG]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12175&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03670 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03670 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03670 Advanced_DNA]
 
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Revision as of 12:08, 13 May 2013

  • Description: peptide transporter

Gene name yclF
Synonyms dtpT
Essential no
Product peptide transporter
Function uptake of di- and tripeptides
Gene expression levels in SubtiExpress: yclF
MW, pI 53 kDa, 9.92
Gene length, protein length 1476 bp, 492 aa
Immediate neighbours yclE, yclG
Sequences Protein DNA Advanced_DNA
Genetic context
YclF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YclF expression.png















Categories containing this gene/protein

transporters/ other, utilization of nitrogen sources other than amino acids, membrane proteins

This gene is a member of the following regulons

ScoC regulon

The gene

Basic information

  • Locus tag: BSU03670

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: POT family of secondary (PMF-dependent) transporters
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
    • repressed during exponential growth (ScoC) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

R Caldwell, R Sapolsky, W Weyler, R R Maile, S C Causey, E Ferrari
Correlation between Bacillus subtilis scoC phenotype and gene expression determined using microarrays for transcriptome analysis.
J Bacteriol: 2001, 183(24);7329-40
[PubMed:11717292] [WorldCat.org] [DOI] (P p)

E R Kunji, E J Smid, R Plapp, B Poolman, W N Konings
Di-tripeptides and oligopeptides are taken up via distinct transport mechanisms in Lactococcus lactis.
J Bacteriol: 1993, 175(7);2052-9
[PubMed:8458848] [WorldCat.org] [DOI] (P p)