Difference between revisions of "DgcW"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykoV]]'', ''[[ykoX]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykoV]]'', ''[[ykoX]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU13420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU13420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU13420 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU13420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU13420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU13420 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ykoW_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ykoW_context.gif]]

Revision as of 10:01, 14 May 2013

  • Description: potential diguanylate cyclase and phosphodiesterase

Gene name ykoW
Synonyms
Essential no
Product potential diguanylate cyclase and phosphodiesterase
Function unknown
Gene expression levels in SubtiExpress: ykoW
MW, pI 84 kDa, 6.823
Gene length, protein length 2247 bp, 749 aa
Immediate neighbours ykoV, ykoX
Sequences Protein DNA DNA_with_flanks
Genetic context
YkoW context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YkoW expression.png















Categories containing this gene/protein

membrane proteins, metabolism of signalling nucleotides

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU13420

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
    • contains a central GGDEF domain and a C-terminal EAL domain PubMed
    • aa 290-735 are similar to E. coli CsrD (18% identity, 43% similarity)
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Jörg Stülke's lab
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Yun Chen, Yunrong Chai, Jian-hua Guo, Richard Losick
Evidence for cyclic Di-GMP-mediated signaling in Bacillus subtilis.
J Bacteriol: 2012, 194(18);5080-90
[PubMed:22821967] [WorldCat.org] [DOI] (I p)

Kazushi Suzuki, Paul Babitzke, Sidney R Kushner, Tony Romeo
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E.
Genes Dev: 2006, 20(18);2605-17
[PubMed:16980588] [WorldCat.org] [DOI] (P p)

M Y Galperin, T A Gaidenko, A Y Mulkidjanian, M Nakano, C W Price
MHYT, a new integral membrane sensor domain.
FEMS Microbiol Lett: 2001, 205(1);17-23
[PubMed:11728710] [WorldCat.org] [DOI] (P p)