Difference between revisions of "Ddl"

From SubtiWiki
Jump to: navigation, search
(Database entries)
Line 80: Line 80:
 
=== Database entries ===
 
=== Database entries ===
  
* '''Structure:'''
+
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2YZG 2YZG] (from ''Thermus thermophilus hb8 mutant'', 40% identity, 53% similarity) {{PubMed|15770647}}
  
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/P96612 P96612]
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/P96612 P96612]

Revision as of 11:43, 18 February 2010

  • Description: D-alanine-D-alanine ligase

Gene name ddl
Synonyms ddlA
Essential yes PubMed
Product D-alanine-D-alanine ligase
Function peptidoglycan precursor biosynthesis
Metabolic function and regulation of this protein in SubtiPathways:
Cell wall
MW, pI 38 kDa, 4.58
Gene length, protein length 1062 bp, 354 aa
Immediate neighbours ydbP, murF
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
Ddl context.gif
This image was kindly provided by SubtiList







The gene

Basic information

  • Locus tag: BSU04560

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine (according to Swiss-Prot)
  • Protein family: ATP-grasp domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot)

Database entries

  • Structure: 2YZG (from Thermus thermophilus hb8 mutant, 40% identity, 53% similarity) PubMed
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References