Difference between revisions of "DapF"

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=== Basic information ===
 
=== Basic information ===
  
* '''Locus tag:'''
+
* '''Locus tag:''' BSU32170
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
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* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O32114 O32114]
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O32114 O32114]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU32170 BSU32170]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU32170]
  
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/5.1.1.7 5.1.1.7]
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/5.1.1.7 5.1.1.7]

Revision as of 09:22, 3 June 2009

  • Description: diaminopimelate epimerase

Gene name dapF
Synonyms yutL
Essential yes PubMed
Product diaminopimelate epimerase
Function biosynthesis of lysine and peptidoglycan
MW, pI 30 kDa, 4.506
Gene length, protein length 852 bp, 284 aa
Immediate neighbours yutM, yutK
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
DapF context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU32170

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate (according to Swiss-Prot)
  • Protein family: diaminopimelate epimerase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed