Difference between revisions of "DacC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || carboxypeptidase  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || carboxypeptidase  
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU18350 dacC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18350 dacC]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 52 kDa, 5.413   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 52 kDa, 5.413   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ppsA]]'', ''[[galM]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ppsA]]'', ''[[galM]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13718&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18350 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18350 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18350 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:dacC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:dacC_context.gif]]

Revision as of 12:57, 13 May 2013

Gene name dacC
Synonyms pbp
Essential no
Product penicillin-binding protein 4A,
D-alanyl-D-alanine carboxypeptidase
Function carboxypeptidase
Gene expression levels in SubtiExpress: dacC
MW, pI 52 kDa, 5.413
Gene length, protein length 1473 bp, 491 aa
Immediate neighbours ppsA, galM
Sequences Protein DNA Advanced_DNA
Genetic context
DacC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
DacC expression.png















Categories containing this gene/protein

cell wall synthesis

This gene is a member of the following regulons

SigH regulon

The gene

Basic information

  • Locus tag: BSU18350

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

  • A mutation was found in this gene after evolution under relexed selection for sporulation PubMed

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: cleavage ofD-Ala-D-Ala interpeptide bridges in peptidoglycan PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1W5D, 2J9P (complex with a peptidoglycan mimetic peptide)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Venkatesh V Nemmara, S A Adediran, Kinjal Dave, Colette Duez, R F Pratt
Dual substrate specificity of Bacillus subtilis PBP4a.
Biochemistry: 2013, 52(15);2627-37
[PubMed:23560856] [WorldCat.org] [DOI] (I p)

Venkatesh V Nemmara, Liudmila Dzhekieva, Kumar Subarno Sarkar, S A Adediran, Colette Duez, Robert A Nicholas, R F Pratt
Substrate specificity of low-molecular mass bacterial DD-peptidases.
Biochemistry: 2011, 50(46);10091-101
[PubMed:22029692] [WorldCat.org] [DOI] (I p)

Christopher T Brown, Laura K Fishwick, Binna M Chokshi, Marissa A Cuff, Jay M Jackson, Travis Oglesby, Alison T Rioux, Enrique Rodriguez, Gregory S Stupp, Austin H Trupp, James S Woollcombe-Clarke, Tracy N Wright, William J Zaragoza, Jennifer C Drew, Eric W Triplett, Wayne L Nicholson
Whole-genome sequencing and phenotypic analysis of Bacillus subtilis mutants following evolution under conditions of relaxed selection for sporulation.
Appl Environ Microbiol: 2011, 77(19);6867-77
[PubMed:21821766] [WorldCat.org] [DOI] (I p)

Colette Duez, Astrid Zervosen, Nathalie Teller, Rémy Melkonian, Emmanuel Banzubazé, Fabrice Bouillenne, André Luxen, Jean-Marie Frère
Characterization of the proteins encoded by the Bacillus subtilis yoxA-dacC operon.
FEMS Microbiol Lett: 2009, 300(1);42-7
[PubMed:19758330] [WorldCat.org] [DOI] (I p)

Eric Sauvage, Colette Duez, Raphaël Herman, Frédéric Kerff, Stephanie Petrella, John W Anderson, S A Adediran, R F Pratt, Jean-Marie Frère, Paulette Charlier
Crystal structure of the Bacillus subtilis penicillin-binding protein 4a, and its complex with a peptidoglycan mimetic peptide.
J Mol Biol: 2007, 371(2);528-39
[PubMed:17582436] [WorldCat.org] [DOI] (P p)

Dirk-Jan Scheffers, Laura J F Jones, Jeffery Errington
Several distinct localization patterns for penicillin-binding proteins in Bacillus subtilis.
Mol Microbiol: 2004, 51(3);749-64
[PubMed:14731276] [WorldCat.org] [DOI] (P p)

A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513] [WorldCat.org] [DOI] (P p)

D L Popham, M E Gilmore, P Setlow
Roles of low-molecular-weight penicillin-binding proteins in Bacillus subtilis spore peptidoglycan synthesis and spore properties.
J Bacteriol: 1999, 181(1);126-32
[PubMed:9864321] [WorldCat.org] [DOI] (P p)

L B Pedersen, T Murray, D L Popham, P Setlow
Characterization of dacC, which encodes a new low-molecular-weight penicillin-binding protein in Bacillus subtilis.
J Bacteriol: 1998, 180(18);4967-73
[PubMed:9733705] [WorldCat.org] [DOI] (P p)