Difference between revisions of "CotF"

From SubtiWiki
Jump to: navigation, search
Line 22: Line 22:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yyzH]]'', ''[[hypR]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yyzH]]'', ''[[hypR]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU40530 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU40530 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU40530 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU40530 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU40530 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU40530 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:cotF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:cotF_context.gif]]

Revision as of 11:45, 14 May 2013

  • Description: spore coat protein

Gene name cotF
Synonyms
Essential no
Product spore coat protein
Function resistance of the spore
Gene expression levels in SubtiExpress: cotF
MW, pI 18 kDa, 7.374
Gene length, protein length 480 bp, 160 aa
Immediate neighbours yyzH, hypR
Sequences Protein DNA DNA_with_flanks
Genetic context
CotF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
CotF expression.png
























Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU40530

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: cotF family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: cotF (according to DBTBS)
  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Daisuke Imamura, Ritsuko Kuwana, Hiromu Takamatsu, Kazuhito Watabe
Localization of proteins to different layers and regions of Bacillus subtilis spore coats.
J Bacteriol: 2010, 192(2);518-24
[PubMed:19933362] [WorldCat.org] [DOI] (I p)

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

Patrick Eichenberger, Masaya Fujita, Shane T Jensen, Erin M Conlon, David Z Rudner, Stephanie T Wang, Caitlin Ferguson, Koki Haga, Tsutomu Sato, Jun S Liu, Richard Losick
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.
PLoS Biol: 2004, 2(10);e328
[PubMed:15383836] [WorldCat.org] [DOI] (I p)

S Cutting, L B Zheng, R Losick
Gene encoding two alkali-soluble components of the spore coat from Bacillus subtilis.
J Bacteriol: 1991, 173(9);2915-9
[PubMed:1708381] [WorldCat.org] [DOI] (P p)