Difference between revisions of "CotB"
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{{SubtiWiki regulon|[[GerE regulon]]}}, | {{SubtiWiki regulon|[[GerE regulon]]}}, | ||
{{SubtiWiki regulon|[[GerR regulon]]}}, | {{SubtiWiki regulon|[[GerR regulon]]}}, | ||
| − | {{SubtiWiki regulon|[[SigK regulon]]}} | + | {{SubtiWiki regulon|[[SigK regulon]]}}, |
| + | {{SubtiWiki regulon|[[SigE regulon]]}} | ||
=The gene= | =The gene= | ||
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* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
| − | ** outer spore coat, at the middle of the spore as a ring- or spiral-like structure {{PubMed|19933362}} | + | ** outer spore coat, at the middle of the spore as a ring- or spiral-like structure, localization depends on [[CotE]] {{PubMed|22171814,19933362}} |
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotB_3714739_3715881_-1 cotB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotB_3714739_3715881_-1 cotB] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigK]] {{PubMed|15699190,1691789}} | + | * '''Sigma factor:''' [[SigE]] {{PubMed|15383836}}, [[SigK]] {{PubMed|15699190,1691789}}, |
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** expressed late during sporulation in the mother cell ([[SigK]], [[GerE]], [[GerR]]) {{PubMed|15699190,1691789,20435725}} | + | ** expressed late during sporulation in the mother cell ([[SigE]], [[SigK]], [[GerE]], [[GerR]]) {{PubMed|15699190,1691789,15383836,20435725}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
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=References= | =References= | ||
| − | <pubmed> 19933362,1518043,2821284,14762006,1691789, 19933362 15699190 20435725</pubmed> | + | <pubmed>22171814, 19933362,1518043,2821284,14762006,1691789, 19933362 15699190 20435725 15383836</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 16:27, 13 August 2013
- Description: spore coat protein (outer)
| Gene name | cotB |
| Synonyms | |
| Essential | no |
| Product | spore coat protein (outer) |
| Function | resistance of the spore |
| Gene expression levels in SubtiExpress: cotB | |
| Interactions involving this protein in SubtInteract: CotB | |
| MW, pI | 42 kDa, 9.831 |
| Gene length, protein length | 1140 bp, 380 aa |
| Immediate neighbours | ywrJ, cotH |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
GerE regulon, GerR regulon, SigK regulon, SigE regulon
The gene
Basic information
- Locus tag: BSU36050
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P07789
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
