Difference between revisions of "Cofactors"
(→Manganese) |
(→Magnesium) |
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Line 1: | Line 1: | ||
= NAD<sup>+</sup> = | = NAD<sup>+</sup> = | ||
* [[Ald]] | * [[Ald]] | ||
+ | * [[AraM]] | ||
* [[BacC]] | * [[BacC]] | ||
* [[BdhA]] | * [[BdhA]] | ||
Line 12: | Line 13: | ||
* [[GudB]] | * [[GudB]] | ||
* [[Mdh]] | * [[Mdh]] | ||
+ | * [[MelA]] | ||
* [[NasE]] | * [[NasE]] | ||
* [[RhaEW]] | * [[RhaEW]] | ||
* [[Tdh]] | * [[Tdh]] | ||
+ | * [[TyrA]] | ||
* [[YcbD]] | * [[YcbD]] | ||
Line 20: | Line 23: | ||
* [[DapB]] | * [[DapB]] | ||
* [[GapB]] | * [[GapB]] | ||
+ | * [[Hom]] | ||
+ | * [[HypO]] | ||
* [[Icd]] | * [[Icd]] | ||
* [[IolW]] | * [[IolW]] | ||
Line 33: | Line 38: | ||
* [[YqkF]] | * [[YqkF]] | ||
* [[YtsJ]] | * [[YtsJ]] | ||
+ | * [[YvgN]] | ||
= FAD = | = FAD = | ||
+ | * [[AcdA]] | ||
+ | * [[AcoL]] | ||
+ | * [[AhpF]] | ||
+ | * [[AlsS]] | ||
+ | * [[AroF]] | ||
+ | * [[CysJ]] | ||
+ | * [[CypB]] ([[YrhJ]]) | ||
+ | * [[EtfA]] | ||
+ | * [[EtfB]] | ||
+ | * [[FadE]] | ||
+ | * [[FadM]] | ||
+ | * [[GidA]] | ||
+ | * [[GlpD]] | ||
* [[GltA]] | * [[GltA]] | ||
+ | * [[HemY]] | ||
+ | * [[Hmp]] | ||
+ | * [[IlvB]] | ||
+ | * [[LpdV]] | ||
+ | * [[MmgC]] | ||
+ | * [[MurB]] | ||
+ | * [[NadB]] | ||
* [[NasB]] | * [[NasB]] | ||
− | * [[ | + | * [[NasD]] |
+ | * [[PdhD]] | ||
+ | * [[PucC]] | ||
+ | * [[PutB]] | ||
* [[PyrK]] | * [[PyrK]] | ||
+ | * [[RibC]] | ||
+ | * [[SdhA]] | ||
+ | * [[ThiO]] | ||
* [[TrmFO]] | * [[TrmFO]] | ||
+ | * [[TrxB]] | ||
+ | * [[YdbM]] | ||
* [[YcgT]] | * [[YcgT]] | ||
+ | * [[YdaP]] | ||
+ | * [[YetM]] | ||
+ | * [[YetO]] | ||
+ | * [[YgaK]] | ||
+ | * [[YhjG]] | ||
* [[YitJ]] | * [[YitJ]] | ||
− | * [[ | + | * [[YitY]] |
− | * [[ | + | * [[YjlD]] |
+ | * [[YngJ]] | ||
+ | * [[YoaI]] | ||
+ | * [[YobN]] | ||
+ | * [[YqiG]] | ||
+ | * [[YsfC]] | ||
+ | * [[YumB]] | ||
* [[YumC]] | * [[YumC]] | ||
− | * [[ | + | * [[YurR]] |
+ | * [[YutJ]] | ||
+ | * [[YvdP]] | ||
= FMN = | = FMN = | ||
+ | * [[CysJ]] | ||
+ | * [[HypO]] | ||
* [[PyrD]] | * [[PyrD]] | ||
+ | * [[YqjM]] | ||
* [[YtvA]] | * [[YtvA]] | ||
Line 56: | Line 106: | ||
* [[YclD]] | * [[YclD]] | ||
* [[YcnD]] | * [[YcnD]] | ||
− | |||
* [[YddN]] | * [[YddN]] | ||
* [[YdeQ]] | * [[YdeQ]] | ||
* [[YdfE]] | * [[YdfE]] | ||
* [[YerD]] | * [[YerD]] | ||
− | |||
* [[Nos]] | * [[Nos]] | ||
− | |||
* [[YfjN]] | * [[YfjN]] | ||
− | |||
− | |||
* [[YusL]] | * [[YusL]] | ||
* [[YusZ]] | * [[YusZ]] | ||
− | |||
* [[YvbT]] | * [[YvbT]] | ||
− | |||
* [[YwrO]] | * [[YwrO]] | ||
− | |||
* [[NfrA]] | * [[NfrA]] | ||
Line 79: | Line 121: | ||
= S-adenosyl-L-methionine (SAM) = | = S-adenosyl-L-methionine (SAM) = | ||
+ | * [[HemN]] | ||
+ | * [[MoaA]] | ||
+ | * [[TrmB]] | ||
+ | * [[TrmK]] | ||
* [[YacO]] | * [[YacO]] | ||
* [[YcgJ]] | * [[YcgJ]] | ||
Line 110: | Line 156: | ||
= Magnesium= | = Magnesium= | ||
+ | * [[ExoR]] | ||
* [[FosB]] | * [[FosB]] | ||
* [[HutP]] | * [[HutP]] | ||
+ | * [[KtrA]] | ||
+ | * [[MrfB]] | ||
+ | * [[YwpJ]] | ||
* [[RnhB]] | * [[RnhB]] | ||
* [[TagT]] | * [[TagT]] | ||
Line 124: | Line 174: | ||
* [[DisA]] | * [[DisA]] | ||
* [[LplD]] | * [[LplD]] | ||
+ | * [[MelA]] | ||
+ | * [[MutT]] | ||
* [[NrdF]] | * [[NrdF]] | ||
* [[NrnA]] | * [[NrnA]] | ||
Line 133: | Line 185: | ||
* [[RnhC]] | * [[RnhC]] | ||
* [[SpoIIE]] | * [[SpoIIE]] | ||
+ | * [[YhfI]] | ||
* [[YpgQ]] | * [[YpgQ]] | ||
+ | * [[YvcI]] | ||
== dimanganic-tyrosyl radical cofactor == | == dimanganic-tyrosyl radical cofactor == | ||
* [[NrdF]] | * [[NrdF]] | ||
= Zinc = | = Zinc = | ||
+ | * [[BshB1]] | ||
* [[ComFA]] | * [[ComFA]] | ||
* [[ComFB]] | * [[ComFB]] | ||
Line 236: | Line 291: | ||
= Protoheme IX = | = Protoheme IX = | ||
* [[EfeB]] | * [[EfeB]] | ||
+ | |||
+ | = Heme (unspecified )= | ||
+ | * [[CysI]] | ||
= Thiamine pyrophosphate, TPP = | = Thiamine pyrophosphate, TPP = | ||
Line 256: | Line 314: | ||
= Pyridoxyl phosphate, PLP = | = Pyridoxyl phosphate, PLP = | ||
* [[AlaT]] | * [[AlaT]] | ||
+ | * [[Alr]] | ||
+ | * [[ArgD]] | ||
* [[AspB]] | * [[AspB]] | ||
* [[BacF]] | * [[BacF]] | ||
+ | * [[BioA]] | ||
+ | * [[BioF]] | ||
* [[CysK]] | * [[CysK]] | ||
* [[Dat]] | * [[Dat]] | ||
+ | * [[DsdA]] | ||
* [[EpsN]] | * [[EpsN]] | ||
* [[GabR]] | * [[GabR]] | ||
+ | * [[GabT]] | ||
* [[GcvPB]] | * [[GcvPB]] | ||
+ | * [[GlgP]] | ||
+ | * [[GlyA]] | ||
* [[GsaB]] | * [[GsaB]] | ||
+ | * [[HemL]] | ||
+ | * [[HisC]] | ||
+ | * [[IlvA]] | ||
+ | * [[KamA]] | ||
+ | * [[Kbl]] | ||
+ | * [[LysA]] | ||
+ | * [[MccA]] | ||
+ | * [[MccB]] | ||
+ | * [[MetC]] | ||
+ | * [[MetI]] | ||
* [[MtnE]] | * [[MtnE]] | ||
* [[NifS]] | * [[NifS]] | ||
Line 270: | Line 346: | ||
* [[PabC]] | * [[PabC]] | ||
* [[PatA]] | * [[PatA]] | ||
+ | * [[PatB]] | ||
* [[PucG]] | * [[PucG]] | ||
+ | * [[RocD]] | ||
* [[SerC]] | * [[SerC]] | ||
+ | * [[SpeA]] | ||
* [[SpsC]] | * [[SpsC]] | ||
* [[SufS]] | * [[SufS]] | ||
+ | * [[ThrC]] | ||
+ | * [[TrpB]] | ||
+ | * [[YaaO]] | ||
* [[YbgE]] | * [[YbgE]] | ||
* [[YcbU]] | * [[YcbU]] | ||
Line 282: | Line 364: | ||
* [[YhdI]] | * [[YhdI]] | ||
* [[YhdR]] | * [[YhdR]] | ||
+ | * [[YhxA]] | ||
* [[YisV]] | * [[YisV]] | ||
* [[YlmE]] | * [[YlmE]] | ||
+ | * [[YnbB]] | ||
+ | * [[YncD]] | ||
+ | * [[YodT]] | ||
* [[YrvO]] | * [[YrvO]] | ||
+ | * [[YtkP]] | ||
* [[YwaA]] | * [[YwaA]] | ||
+ | <pubmed> 31134210</pubmed> | ||
= Tetrahydrofalate = | = Tetrahydrofalate = |
Revision as of 12:22, 27 December 2019
Contents
- 1 NAD+
- 2 NADP+
- 3 FAD
- 4 FMN
- 5 Additional Flavoproteins
- 6 S-adenosyl-L-methionine (SAM)
- 7 Biotin
- 8 Cobalamin
- 9 Calcium
- 10 Copper
- 11 Nickel
- 12 Magnesium
- 13 Manganese
- 14 Zinc
- 15 MoCo (molybdenum cofactor, molybdopterin)
- 16 Iron-sulfur cluster
- 17 Heme A
- 18 Heme b
- 19 Heme d
- 20 Protoheme IX
- 21 Heme (unspecified )
- 22 Thiamine pyrophosphate, TPP
- 23 Lipoic acid
- 24 Pyridoxyl phosphate, PLP
- 25 Tetrahydrofalate
NAD+
NADP+
FAD
- AcdA
- AcoL
- AhpF
- AlsS
- AroF
- CysJ
- CypB (YrhJ)
- EtfA
- EtfB
- FadE
- FadM
- GidA
- GlpD
- GltA
- HemY
- Hmp
- IlvB
- LpdV
- MmgC
- MurB
- NadB
- NasB
- NasD
- PdhD
- PucC
- PutB
- PyrK
- RibC
- SdhA
- ThiO
- TrmFO
- TrxB
- YdbM
- YcgT
- YdaP
- YetM
- YetO
- YgaK
- YhjG
- YitJ
- YitY
- YjlD
- YngJ
- YoaI
- YobN
- YqiG
- YsfC
- YumB
- YumC
- YurR
- YutJ
- YvdP
FMN
Additional Flavoproteins
Peter Macheroux, Barbara Kappes, Steven E Ealick
Flavogenomics--a genomic and structural view of flavin-dependent proteins.
FEBS J: 2011, 278(15);2625-34
[PubMed:21635694]
[WorldCat.org]
[DOI]
(I p)
S-adenosyl-L-methionine (SAM)
Biotin
Cobalamin
Calcium
Copper
Nickel
Mark A Farrugia, Lee Macomber, Robert P Hausinger
Biosynthesis of the urease metallocenter.
J Biol Chem: 2013, 288(19);13178-85
[PubMed:23539618]
[WorldCat.org]
[DOI]
(I p)
Harini Kaluarachchi, Kim C Chan Chung, Deborah B Zamble
Microbial nickel proteins.
Nat Prod Rep: 2010, 27(5);681-94
[PubMed:20442959]
[WorldCat.org]
[DOI]
(I p)
Stephen W Ragsdale
Nickel-based Enzyme Systems.
J Biol Chem: 2009, 284(28);18571-5
[PubMed:19363030]
[WorldCat.org]
[DOI]
(P p)
Magnesium
Manganese
dimanganic-tyrosyl radical cofactor
Zinc
MoCo (molybdenum cofactor, molybdopterin)
Iron-sulfur cluster
- CitB
- YsfD
- MmgE
- LutB
- NasE
- CysI
- IlvD
- KamA
- SdaAA
- SdaAB
- PurF
- PyrK
- PucE
- IspG
- IspH
- Fer
- AlbA
- SkfB
- Fnr
- SufA
- SufB
- NadA
- LipA
- LeuC
- QcrA
- NarG
- NasC
- NasD
- NsrR
- QueG
- YaaT
- YsfD
- IspH
- NarH
- GltA
- SdhB
- BioB
- MoaA
- ThiC
- HemN
- HemZ
- QueE
- YmcB
- MtaB
- RlmCD
- YloN
- YfjO
- SplB
- AddB
- MutY
- Nth
[2 Fe-2 S] cluster
Heme A
Heme b
Heme d
Protoheme IX
Heme (unspecified )
Thiamine pyrophosphate, TPP
E1 subunits of ketoacid dehydrogenases/ acetoin dehydrogenase
Lipoic acid
E2 subunits of ketoacid dehydrogenases/ acetoin dehydrogenase
H protein of the glycine cleavage system
Pyridoxyl phosphate, PLP
- AlaT
- Alr
- ArgD
- AspB
- BacF
- BioA
- BioF
- CysK
- Dat
- DsdA
- EpsN
- GabR
- GabT
- GcvPB
- GlgP
- GlyA
- GsaB
- HemL
- HisC
- IlvA
- KamA
- Kbl
- LysA
- MccA
- MccB
- MetC
- MetI
- MtnE
- NifS
- NifZ
- NtdA
- PabC
- PatA
- PatB
- PucG
- RocD
- SerC
- SpeA
- SpsC
- SufS
- ThrC
- TrpB
- YaaO
- YbgE
- YcbU
- YcxD
- YdeF
- YdeL
- YdfD
- YhdI
- YhdR
- YhxA
- YisV
- YlmE
- YnbB
- YncD
- YodT
- YrvO
- YtkP
- YwaA
Björn Richts, Jonathan Rosenberg, Fabian M Commichau
##Title##
Front Mol Biosci: 2019, 6;32
[PubMed:31134210]
[WorldCat.org]
[DOI]
(P e)