Difference between revisions of "Cofactors"

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(Magnesium)
(Manganese)
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Line 1: Line 1:
 
= NAD<sup>+</sup> =
 
= NAD<sup>+</sup> =
 
* [[Ald]]
 
* [[Ald]]
 +
* [[AraM]]
 
* [[BacC]]
 
* [[BacC]]
 
* [[BdhA]]
 
* [[BdhA]]
Line 12: Line 13:
 
* [[GudB]]
 
* [[GudB]]
 
* [[Mdh]]
 
* [[Mdh]]
 +
* [[MelA]]
 
* [[NasE]]
 
* [[NasE]]
 
* [[RhaEW]]
 
* [[RhaEW]]
 
* [[Tdh]]
 
* [[Tdh]]
 +
* [[TyrA]]
 
* [[YcbD]]
 
* [[YcbD]]
  
Line 20: Line 23:
 
* [[DapB]]
 
* [[DapB]]
 
* [[GapB]]
 
* [[GapB]]
 +
* [[Hom]]
 +
* [[HypO]]
 
* [[Icd]]
 
* [[Icd]]
 
* [[IolW]]
 
* [[IolW]]
Line 33: Line 38:
 
* [[YqkF]]
 
* [[YqkF]]
 
* [[YtsJ]]
 
* [[YtsJ]]
 +
* [[YvgN]]
  
 
= FAD =
 
= FAD =
 +
* [[AcdA]]
 +
* [[AcoL]]
 +
* [[AhpF]]
 +
* [[AlsS]]
 +
* [[AroF]]
 
* [[CysJ]]
 
* [[CysJ]]
 +
* [[CypB]] ([[YrhJ]])
 +
* [[EtfA]]
 +
* [[EtfB]]
 +
* [[FadE]]
 +
* [[FadM]]
 +
* [[GidA]]
 +
* [[GlpD]]
 
* [[GltA]]
 
* [[GltA]]
 +
* [[HemY]]
 +
* [[Hmp]]
 +
* [[IlvB]]
 +
* [[LpdV]]
 +
* [[MmgC]]
 +
* [[MurB]]
 +
* [[NadB]]
 
* [[NasB]]
 
* [[NasB]]
* [[NasC]]
+
* [[NasD]]
 +
* [[PdhD]]
 +
* [[PucC]]
 +
* [[PutB]]
 
* [[PyrK]]
 
* [[PyrK]]
 +
* [[RibC]]
 +
* [[SdhA]]
 +
* [[ThiO]]
 
* [[TrmFO]]
 
* [[TrmFO]]
 +
* [[TrxB]]
 +
* [[YdbM]]
 
* [[YcgT]]
 
* [[YcgT]]
 +
* [[YdaP]]
 +
* [[YetM]]
 +
* [[YetO]]
 +
* [[YgaK]]
 +
* [[YhjG]]
 
* [[YitJ]]
 
* [[YitJ]]
* [[YkuN]]
+
* [[YitY]]
* [[YkuP]]
+
* [[YjlD]]
 +
* [[YngJ]]
 +
* [[YoaI]]
 +
* [[YobN]]
 +
* [[YqiG]]
 +
* [[YsfC]]
 +
* [[YumB]]
 
* [[YumC]]
 
* [[YumC]]
* [[YsfC]]
+
* [[YurR]]
 +
* [[YutJ]]
 +
* [[YvdP]]
  
 
= FMN =
 
= FMN =
 
* [[CysJ]]
 
* [[CysJ]]
 +
* [[HypO]]
 
* [[PyrD]]
 
* [[PyrD]]
 
* [[YqjM]]
 
* [[YqjM]]
Line 59: Line 106:
 
* [[YclD]]
 
* [[YclD]]
 
* [[YcnD]]
 
* [[YcnD]]
* [[YdbM]]
 
 
* [[YddN]]
 
* [[YddN]]
 
* [[YdeQ]]
 
* [[YdeQ]]
 
* [[YdfE]]
 
* [[YdfE]]
 
* [[YerD]]
 
* [[YerD]]
* [[YetM]]
 
 
* [[Nos]]
 
* [[Nos]]
* [[HypO]]
 
 
* [[YfjN]]
 
* [[YfjN]]
* [[YutJ]]
 
* [[PucC]]
 
 
* [[YusL]]
 
* [[YusL]]
 
* [[YusZ]]
 
* [[YusZ]]
 
* [[YvbT]]
 
* [[YvbT]]
* [[TrxB]]
 
 
* [[YwrO]]
 
* [[YwrO]]
* [[AcdA]]
 
 
* [[NfrA]]
 
* [[NfrA]]
  
Line 82: Line 122:
 
= S-adenosyl-L-methionine (SAM) =
 
= S-adenosyl-L-methionine (SAM) =
 
* [[HemN]]
 
* [[HemN]]
 +
* [[MoaA]]
 
* [[TrmB]]
 
* [[TrmB]]
 +
* [[TrmK]]
 
* [[YacO]]
 
* [[YacO]]
 
* [[YcgJ]]
 
* [[YcgJ]]
Line 114: Line 156:
  
 
= Magnesium=
 
= Magnesium=
 +
* [[ExoR]]
 
* [[FosB]]
 
* [[FosB]]
 
* [[HutP]]
 
* [[HutP]]
 
* [[MrfB]]
 
* [[MrfB]]
* [[PhoC]]
+
* [[YwpJ]]
 
* [[RnhB]]
 
* [[RnhB]]
 
* [[TagT]]
 
* [[TagT]]
Line 130: Line 173:
 
* [[DisA]]
 
* [[DisA]]
 
* [[LplD]]
 
* [[LplD]]
 +
* [[MelA]]
 
* [[NrdF]]
 
* [[NrdF]]
 
* [[NrnA]]
 
* [[NrnA]]
Line 139: Line 183:
 
* [[RnhC]]
 
* [[RnhC]]
 
* [[SpoIIE]]
 
* [[SpoIIE]]
 +
* [[YhfI]]
 
* [[YpgQ]]
 
* [[YpgQ]]
 
== dimanganic-tyrosyl radical cofactor ==
 
== dimanganic-tyrosyl radical cofactor ==
Line 318: Line 363:
 
* [[YisV]]
 
* [[YisV]]
 
* [[YlmE]]
 
* [[YlmE]]
 +
* [[YnbB]]
 
* [[YncD]]
 
* [[YncD]]
 
* [[YodT]]
 
* [[YodT]]
Line 323: Line 369:
 
* [[YtkP]]
 
* [[YtkP]]
 
* [[YwaA]]
 
* [[YwaA]]
 +
<pubmed>    31134210</pubmed>
  
 
= Tetrahydrofalate =
 
= Tetrahydrofalate =

Revision as of 16:29, 7 September 2019

NAD+

NADP+

FAD

FMN

Additional Flavoproteins


S-adenosyl-L-methionine (SAM)

Biotin

Cobalamin

Calcium

Copper

Nickel

Mark A Farrugia, Lee Macomber, Robert P Hausinger
Biosynthesis of the urease metallocenter.
J Biol Chem: 2013, 288(19);13178-85
[PubMed:23539618] [WorldCat.org] [DOI] (I p)

Harini Kaluarachchi, Kim C Chan Chung, Deborah B Zamble
Microbial nickel proteins.
Nat Prod Rep: 2010, 27(5);681-94
[PubMed:20442959] [WorldCat.org] [DOI] (I p)

Stephen W Ragsdale
Nickel-based Enzyme Systems.
J Biol Chem: 2009, 284(28);18571-5
[PubMed:19363030] [WorldCat.org] [DOI] (P p)


Magnesium

Manganese

dimanganic-tyrosyl radical cofactor

Zinc

MoCo (molybdenum cofactor, molybdopterin)

Iron-sulfur cluster

[2 Fe-2 S] cluster

Heme A

Heme b

Heme d

Protoheme IX

Heme (unspecified )

Thiamine pyrophosphate, TPP

E1 subunits of ketoacid dehydrogenases/ acetoin dehydrogenase

Lipoic acid

E2 subunits of ketoacid dehydrogenases/ acetoin dehydrogenase

H protein of the glycine cleavage system

  • GcvH (also required for LipL-catalyzed octanoyl transfer from AcpA to the E2s)

Pyridoxyl phosphate, PLP


Tetrahydrofalate

Methylene-THF