Difference between revisions of "Carbon core metabolism"

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(Glycolysis)
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=== Glycolysis ===  
 
=== Glycolysis ===  
* [[cggR]]
+
* ''[[cggR]]''
* [[eno]]
+
* ''[[eno]]''
* [[fbaA]]
+
* ''[[fbaA]]''
* [[gapA]]
+
* ''[[gapA]]''
* [[glcT]]
+
* ''[[glcT]]''
* [[mgsA]]
+
* ''[[mgsA]]''
* [[pfkA]]
+
* ''[[pfkA]]''
* [[pgi]]
+
* ''[[pgi]]''
* [[pgk]]
+
* ''[[pgk]]''
* [[pgm]]
+
* ''[[pgm]]''
* [[ptsG]]
+
* ''[[ptsG]]''
* [[pyk]]
+
* ''[[pyk]]''
* [[tpi]]
+
* ''[[tpi]]''
  
 
'''see the structures of glycolytic enzymes [http://www.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb50_1.html Glycolytic enzymes: molecules of the month]'''
 
'''see the structures of glycolytic enzymes [http://www.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb50_1.html Glycolytic enzymes: molecules of the month]'''
  
 
=== Gluconeogenesis ===  
 
=== Gluconeogenesis ===  
* [[ccpN]]
+
* ''[[ccpN]]''
* [[eno]]
+
* ''[[eno]]''
* [[fbaA]]
+
* ''[[fbaA]]''
* [[fbp]]
+
* ''[[fbp]]''
* [[gapB]]
+
* ''[[gapB]]''
* [[glpX]]
+
* ''[[glpX]]''
* [[pckA]]
+
* ''[[pckA]]''
* [[pgi]]
+
* ''[[pgi]]''
* [[pgk]]
+
* ''[[pgk]]''
* [[pgm]]
+
* ''[[pgm]]''
* [[tpi]]
+
* ''[[tpi]]''
* [[yqfL]]
+
* ''[[yqfL]]''
* [[yvcK]]
+
* ''[[yvcK]]''
  
 
=== Pentose phosphate pathway ===  
 
=== Pentose phosphate pathway ===  
* [[gndA]]
+
* ''[[gndA]]''
* [[rpe]]
+
* ''[[rpe]]''
* [[tkt]]
+
* ''[[tkt]]''
* [[ykgB]]
+
* ''[[ykgB]]''
* [[ywjH]]
+
* ''[[ywjH]]''
* [[ywlF]]
+
* ''[[ywlF]]''
* [[zwf]]
+
* ''[[zwf]]''
  
 
=== TCA cycle ===  
 
=== TCA cycle ===  
* [[ccpC]]
+
* ''[[ccpC]]''
* [[citB]]
+
* ''[[citB]]''
* [[citG]]
+
* ''[[citG]]''
* [[citZ]]
+
* ''[[citZ]]''
* [[fsrA]]
+
* ''[[fsrA]]''
* [[icd]]
+
* ''[[icd]]''
* [[mdh]]
+
* ''[[mdh]]''
* [[odhA]]
+
* ''[[odhA]]''
* [[odhB]]
+
* ''[[odhB]]''
* [[pdhA]]
+
* ''[[pdhA]]''
* [[pdhB]]
+
* ''[[pdhB]]''
* [[pdhC]]
+
* ''[[pdhC]]''
* [[pdhD]]
+
* ''[[pdhD]]''
* [[pycA]]
+
* ''[[pycA]]''
* [[sdhA]]
+
* ''[[sdhA]]''
* [[sdhB]]
+
* ''[[sdhB]]''
* [[sdhC]]
+
* ''[[sdhC]]''
* [[sucC]]
+
*'' [[sucC]]''
* [[sucD]]
+
* ''[[sucD]]''
  
 
=== Overflow metabolism ===  
 
=== Overflow metabolism ===  
* [[ackA]]
+
* ''[[ackA]]''
* [[alsD]]
+
* ''[[alsD]]''
* [[alsR]]
+
* ''[[alsR]]''
* [[alsS]]
+
* ''[[alsS]]''
* [[bdhA]]
+
* ''[[bdhA]]''
* [[lctP]]
+
* ''[[lctP]]''
* [[ldh]]
+
* ''[[ldh]]''
* [[pta]]
+
* ''[[pta]]''
* [[rex]]
+
* ''[[rex]]''
 +
 
 +
== Carbon core metabolism in [http://subtiwiki.uni-goettingen.de/subtipathways.html ''Subti''Pathways]: [http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central carbon metabolism]==
  
 
==Important original publications==
 
==Important original publications==

Revision as of 20:39, 3 March 2011

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Glycolysis

see the structures of glycolytic enzymes Glycolytic enzymes: molecules of the month

Gluconeogenesis

Pentose phosphate pathway

TCA cycle

Overflow metabolism

Carbon core metabolism in SubtiPathways: Central carbon metabolism

Important original publications

Frederik M Meyer, Jan Gerwig, Elke Hammer, Christina Herzberg, Fabian M Commichau, Uwe Völker, Jörg Stülke
Physical interactions between tricarboxylic acid cycle enzymes in Bacillus subtilis: evidence for a metabolon.
Metab Eng: 2011, 13(1);18-27
[PubMed:20933603] [WorldCat.org] [DOI] (I p)

Roelco J Kleijn, Joerg M Buescher, Ludovic Le Chat, Matthieu Jules, Stephane Aymerich, Uwe Sauer
Metabolic fluxes during strong carbon catabolite repression by malate in Bacillus subtilis.
J Biol Chem: 2010, 285(3);1587-96
[PubMed:19917605] [WorldCat.org] [DOI] (I p)

Fabian M Commichau, Fabian M Rothe, Christina Herzberg, Eva Wagner, Daniel Hellwig, Martin Lehnik-Habrink, Elke Hammer, Uwe Völker, Jörg Stülke
Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing.
Mol Cell Proteomics: 2009, 8(6);1350-60
[PubMed:19193632] [WorldCat.org] [DOI] (I p)

Simon Tännler, Eliane Fischer, Dominique Le Coq, Thierry Doan, Emmanuel Jamet, Uwe Sauer, Stéphane Aymerich
CcpN controls central carbon fluxes in Bacillus subtilis.
J Bacteriol: 2008, 190(18);6178-87
[PubMed:18586936] [WorldCat.org] [DOI] (I p)

Anne Goelzer, Fadia Bekkal Brikci, Isabelle Martin-Verstraete, Philippe Noirot, Philippe Bessières, Stéphane Aymerich, Vincent Fromion
Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.
BMC Syst Biol: 2008, 2;20
[PubMed:18302748] [WorldCat.org] [DOI] (I e)

Hans-Matti Blencke, Georg Homuth, Holger Ludwig, Ulrike Mäder, Michael Hecker, Jörg Stülke
Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways.
Metab Eng: 2003, 5(2);133-49
[PubMed:12850135] [WorldCat.org] [DOI] (P p)

H Ludwig, G Homuth, M Schmalisch, F M Dyka, M Hecker, J Stülke
Transcription of glycolytic genes and operons in Bacillus subtilis: evidence for the presence of multiple levels of control of the gapA operon.
Mol Microbiol: 2001, 41(2);409-22
[PubMed:11489127] [WorldCat.org] [DOI] (P p)

U Sauer, V Hatzimanikatis, J E Bailey, M Hochuli, T Szyperski, K Wüthrich
Metabolic fluxes in riboflavin-producing Bacillus subtilis.
Nat Biotechnol: 1997, 15(5);448-52
[PubMed:9131624] [WorldCat.org] [DOI] (P p)

Reviews

Yasutaro Fujita
Carbon catabolite control of the metabolic network in Bacillus subtilis.
Biosci Biotechnol Biochem: 2009, 73(2);245-59
[PubMed:19202299] [WorldCat.org] [DOI] (I p)

Abraham L Sonenshein
Control of key metabolic intersections in Bacillus subtilis.
Nat Rev Microbiol: 2007, 5(12);917-27
[PubMed:17982469] [WorldCat.org] [DOI] (I p)

Uwe Sauer, Bernhard J Eikmanns
The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria.
FEMS Microbiol Rev: 2005, 29(4);765-94
[PubMed:16102602] [WorldCat.org] [DOI] (P p)

J Stülke, W Hillen
Regulation of carbon catabolism in Bacillus species.
Annu Rev Microbiol: 2000, 54;849-80
[PubMed:11018147] [WorldCat.org] [DOI] (P p)